Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00355 ATGACTAAATGCCAGCTTCCTTATGAGAATTTATCTCCATTGCAAGCAGCAGTTGGAGTGGTCCAGAAGGGTTTAAGGCTTAAAATTCCAAGGCATACTCATCCAAAGTTAGTGGAATTGATTCACTGGTGCTGGCACCAAGATCCATCTTTGAGACCCAATTTCTCAGAAATTCTTGAATTTCTGCTGCACATGACCAAAACGTTAAAAAAGAGATCTAGACAGATCGTTGGGGAATGTGAAGAAGGCCAAGGGAATGCATGA 264 0.4167 MTKCQLPYENLSPLQAAVGVVQKGLRLKIPRHTHPKLVELIHWCWHQDPSLRPNFSEILEFLLHMTKTLKKRSRQIVGECEEGQGNA. 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00355 87 SUPERFAMILY Protein kinase-like (PK-like) 4 62 IPR011009 -
Seca4g00355 87 Pfam Protein tyrosine and serine/threonine kinase 1 62 IPR001245 GO:0004672|GO:0006468
Seca4g00355 87 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 67 - -
Seca4g00355 87 Gene3D Transferase(Phosphotransferase) domain 1 1 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00355 Seca-Chr4 5722704 5723475 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00355 5 74 MAP Kinase Kinase Kinase AT4G35780 61.429 2.28e-25 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Seca4g00355 PK_Tyr_Ser-Thr 9.1e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00355 - - vra:106761427 117.087