Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00354 ATGGGAGATACAGAGAGTTGCAGTAGCAGAGTTTTCAGTTCTGGATGGAATCAAAGCCGAAAACAGAGGCAGAAGGTTGTGGTTTACGACGAGGTTCTTAGTCGATTAAGGGAATTGAATGTCCCAGAGGCTTTGGTTCCAGGTTTTGAAGATGAACTTTGGGAGCACTTTTTTCGCCTTCCCACTAGGTATGCGTTGGATATGAATGTGGAGAGGGCCCAAGATGTTCTTATGCATAAAAGATTGCTGCACATTGCACGAGCCTCAGCTACAGTAACGGGACCTGCAGTCGAAGTCCGTCTTGTACAGGATCCAAATGGGGACAGCCTATTGTATCCTCCTCACCCTGAATTGGGTCTGAAGTCTGAACCTAAAGGGCCTGAGGATAATAATATTAACAATTTGGACTTTGGAGTGACAGTTTGTTCTGCTTCTGATGTGCGTTGTAGTACATCCCTTCATTCAAACTCACAATGTAAAGTTAGTCATCAAGATTCTGATATTCCAGGCAACATGAGGCATGATTTTGTCTATTATACTTGTCCAACTGTTGCATTTTTTCTTTCATGCTATTTCAGCTTCCATCCTCCCCCAACTTTTGGTTCATCATCTAACGTGGAGCTTGCTCTTGGTGTGAGCCAGTTACAAGTTCGAGATAGGGATAACTATTTGAATTTTTATGCACACTATGCCTGGCCTATGCATGAAATCACAATTTCAACAAATGACAAGCCAAAACTTCTCAGTCAGTTGACTTCCTTACTCTCTGAGACTGGGCTGGACATTCAAGAAGCACATGCTTTTTCCACATTGGATGGATATTCATTGGATGTTTTTGTTGTTGGTGGTTGGGAAGTGGAGAAGACAGAGGAGTTAAAGCACGTATTAGCAGAGAAGCTTCATAAACTTGAGAAGCAACCTCAGTTGAAAGAAAATGGCAGGCTTCGTCTTGCAGAGCAAGAGCAAATCGGGATGAACTTCATCTCTAGACATGTAAATTTGCCCAATTGTGAAAATGATGTCTCGAAAATCAATGCATGGTGTTTGAGATATGAAAAGAAAATTGCATCTGGTCCTTTCAGTGACCTGTATAAAGGTACGTTCTGCAATCAAGATGTGGCTATCAAAGTCCTTAAGGATGAAAATTTGAATGAAAATATACAGAGGGAGTTTACTCAGGAAGTCTACATTCTAAGTAAGATTCAGCACAAGAATATTGTCAAATTTGTTGGCGCTTGTACAAAACCCCCAAACCTTTACCTTGTCACGGAATATTTGTCCGGCGGAAGTATATATGACTTTCTGCATATACGGAAAACTGTCCTTACTCTTCCATCTTTGCTCAAAGTAGCTATTGATATTTCCGAAGGGATGAAATATTTGCATCAGAATGATATCATACATCGGGACCTCAAGACAGCTAATCTTTTGATAGACGAGAATGGCGTAGTCAAGGTTGCTGATTTTGGTGTAGCCAGAGTGTATGATCAGGCTGGTATCATGACTGCAGAAACTGGAACTTATCGGTGGATGGCTCCAGAGGTTATTGAACATAGACCATATGATCACAAAGCAGATGTCTTTAGCTTTGCCATTGTTCTATGGGAGCTGCTCACAGGAAAGGTGATGCTTTTTACTTCTTTTGTCACTCTTTAG 1656 0.413 MGDTESCSSRVFSSGWNQSRKQRQKVVVYDEVLSRLRELNVPEALVPGFEDELWEHFFRLPTRYALDMNVERAQDVLMHKRLLHIARASATVTGPAVEVRLVQDPNGDSLLYPPHPELGLKSEPKGPEDNNINNLDFGVTVCSASDVRCSTSLHSNSQCKVSHQDSDIPGNMRHDFVYYTCPTVAFFLSCYFSFHPPPTFGSSSNVELALGVSQLQVRDRDNYLNFYAHYAWPMHEITISTNDKPKLLSQLTSLLSETGLDIQEAHAFSTLDGYSLDVFVVGGWEVEKTEELKHVLAEKLHKLEKQPQLKENGRLRLAEQEQIGMNFISRHVNLPNCENDVSKINAWCLRYEKKIASGPFSDLYKGTFCNQDVAIKVLKDENLNENIQREFTQEVYILSKIQHKNIVKFVGACTKPPNLYLVTEYLSGGSIYDFLHIRKTVLTLPSLLKVAIDISEGMKYLHQNDIIHRDLKTANLLIDENGVVKVADFGVARVYDQAGIMTAETGTYRWMAPEVIEHRPYDHKADVFSFAIVLWELLTGKVMLFTSFVTL. 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00354 551 Gene3D Phosphorylase Kinase; domain 1 343 427 - -
Seca4g00354 551 SUPERFAMILY Protein kinase-like (PK-like) 341 543 IPR011009 -
Seca4g00354 551 Pfam Protein tyrosine and serine/threonine kinase 350 540 IPR001245 GO:0004672|GO:0006468
Seca4g00354 551 ProSiteProfiles Protein kinase domain profile. 349 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g00354 551 Gene3D Transferase(Phosphotransferase) domain 1 428 547 - -
Seca4g00354 551 PRINTS Tyrosine kinase catalytic domain signature 506 516 IPR001245 GO:0004672|GO:0006468
Seca4g00354 551 PRINTS Tyrosine kinase catalytic domain signature 460 478 IPR001245 GO:0004672|GO:0006468
Seca4g00354 551 PRINTS Tyrosine kinase catalytic domain signature 525 547 IPR001245 GO:0004672|GO:0006468
Seca4g00354 551 PRINTS Tyrosine kinase catalytic domain signature 423 436 IPR001245 GO:0004672|GO:0006468
Seca4g00354 551 ProSiteProfiles ACT domain profile. 236 316 IPR002912 -
Seca4g00354 551 CDD STKc_MAP3K-like 355 542 - -
Seca4g00354 551 SMART serkin_6 349 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g00354 551 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Seca4g00354 551 FunFam Serine/threonine-protein kinase isoform 1 339 427 - -
Seca4g00354 551 Coils Coil 286 306 - -
Seca4g00354 551 SUPERFAMILY ACT-like 234 306 IPR045865 -
Seca4g00354 551 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 167 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00354 Seca-Chr4 5715335 5722028 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00354 3 542 MAP Kinase Kinase Kinase AT2G17700 49.631 7.21e-168 485
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Seca4g00354 PK_Tyr_Ser-Thr 2.3e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00354 - - gmx:100818047 724.161