Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00352 ATGTCGACGGCGGTGGTAAGAACCAATGGCTGCGGTGGTGGTGGTGACGAGGGGAAGCACTATCCTCCCCCACTTGCCTCTCACGAGGACATAGTTAATGCTTCTTCACTCTTCTGGGACACTCTCAAGCAATTTCACTTCATTATGGCTACCAAATTCATGATTCCTGTGATTGGAGGAAAGGAACTGGACTTGCACGTTCTCTACGTGGAGGTTACGAGGCGAAGCGGTTACGAGAAGGTGGTTGCAGAGAAGAAATGGAGGGAAGTTGGTAGTGTATTCAGATTCTCATCTACAACCACAAGTGCTTCTTTTGTACTGAGGAAACATTACTTCAATCTTCTCTTCCATTATGAGCAAGTTCACTTCTTTAAGCTTCGGGGACCTCTCTACACTCCATCACCAGATGCATTTTCTGGCAACAGCCCTTCGTGGAGACCTGAATTAGCTATTGTTGAATACACACCTAAGCAGACAAACCACACTCCTGAATCCCCCCAGGCTGAAGTGGCCATAGATACTTCAAGTCTCTCAGGGTATGGAACGATTGAAGGAAAATTTGATTGTGGCTATTTAGTGTCTGTGAAATTGGGTTCGGAGGTTCTTAGAGGTGTGCTTTACCATCCAGAACAATTGGTTCCTCCTCCTTCTGTTGCGGAACCGCAACAGGACCATGCTACCGGAAGATACAATCGAAGACGTGGCCGTTCTGCTCGGAGAAGGAAAAACAAAAGAAGGTGGGACCCCAATTACCCAAAACCAAATAGGAGTGGCTATAACTTCTTCTTTGCTGAAAAACATTACAAGCTGAAAGAACTCTACCCAAACAGAGAAAGGGAGTTCACCAAAATGATTGGCGAGTCCTGGAATAATCTTAGCCCTGAAGAAAGAAAGGTTTACCAGAATATTGGCCTAAGGGACAAAGAAAGATATAAAAGAGAATTGACGGAGTACAAAGAGAAAATGAAGCTTAGGCAGACTGAAGAAATTGGAGGTCCATAA 1002 0.4501 MSTAVVRTNGCGGGGDEGKHYPPPLASHEDIVNASSLFWDTLKQFHFIMATKFMIPVIGGKELDLHVLYVEVTRRSGYEKVVAEKKWREVGSVFRFSSTTTSASFVLRKHYFNLLFHYEQVHFFKLRGPLYTPSPDAFSGNSPSWRPELAIVEYTPKQTNHTPESPQAEVAIDTSSLSGYGTIEGKFDCGYLVSVKLGSEVLRGVLYHPEQLVPPPSVAEPQQDHATGRYNRRRGRSARRRKNKRRWDPNYPKPNRSGYNFFFAEKHYKLKELYPNREREFTKMIGESWNNLSPEERKVYQNIGLRDKERYKRELTEYKEKMKLRQTEEIGGP. 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00352 333 MobiDBLite consensus disorder prediction 232 247 - -
Seca4g00352 333 Pfam ARID/BRIGHT DNA binding domain 36 119 IPR001606 GO:0003677
Seca4g00352 333 SMART hmgende2 251 320 IPR009071 -
Seca4g00352 333 CDD HMG-box_AtHMGB9-like 252 318 - -
Seca4g00352 333 CDD ARID_HMGB9-like 35 119 IPR045303 GO:0003677
Seca4g00352 333 Gene3D High mobility group box domain 235 331 IPR036910 -
Seca4g00352 333 Gene3D - 25 127 IPR036431 GO:0003677
Seca4g00352 333 MobiDBLite consensus disorder prediction 212 252 - -
Seca4g00352 333 ProSiteProfiles ARID domain profile. 32 123 IPR001606 GO:0003677
Seca4g00352 333 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 252 319 IPR009071 -
Seca4g00352 333 SUPERFAMILY HMG-box 249 322 IPR036910 -
Seca4g00352 333 SMART ARID_2 29 119 - -
Seca4g00352 333 Coils Coil 308 328 - -
Seca4g00352 333 SUPERFAMILY ARID-like 33 129 IPR036431 GO:0003677
Seca4g00352 333 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 17 326 - -
Seca4g00352 333 Pfam HMG (high mobility group) box 252 319 IPR009071 -
Seca4g00352 333 SMART bright_3 33 124 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00352 Seca-Chr4 5696718 5699668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00352 19 332 ARID Transcription Factor Family AT1G76110 66.038 4.74e-135 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Seca4g00352 ARID 3.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00352 - - gmx:100784746 525.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00352 4 5696718 5699668 Seca4g00352 4 5696718 5699668 ECH