Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00350 ATGGGTTCTTTCTGTGCCCTAGACGAACCTCTGCAATATCCCGTTGCTCGCAGAGATGACTCAGTCGTTGACGACTACCATGGCGTCAAGATTGCCGATCCTTATCGATGGCTCGAAGATCCTGATGCGGAAGAAGTGAAAGAGTTCGTAGAGAAACAAGTTCAATTGACGAATTCCGTACTTCAAAAATGCGAAACTAGAGCGAAGCTTAATCAAACAATCACCAAGCTGTTTGACCATCCTCGTTATGATGCTCCTTTTAGGCGAGCCAATAAGTACTTTTACTTCCACAACACCGGTCTTCAGCCACAAGACATCCTCTATGTGCAGGACAGTTTGGACGGAGAACCAGAGGTTTTGCTTGATCCCAATGCCTTAAGTGAAGACGGAACCGTCTCGCTGGCATCACTGTCGGTGAGCGAAGATGCCAAGTACTTGGCTTATGGGCTTAGTTCAAGTGGTAGCGATTGGGTGACTATAAAAGTAATGCGTATTGCGGACAAGAATGTTGAGCCTGATACACTATCATGGGTCAAGTTTTCCTCTATTAGTTGGACACATGATGGCAAAGGTTTCTTTTATAGCCGCTATCCTGCACCCAAAGATGGAGAAGTAGTAGATGCAGGGACTGAGACGAATTCTAACCTTTATCATCAGCTATATTATCATTTTTTGGGTACTGATCAATCAGAAGATATTTTGTGCTGGAGAGATCTTGAAAACCCTAAATACTCGTTTGGAGGAAGTGTTACGGATGACGGGAAGTATGTCCTCCTCTATATTGGAGAAGGGTGCGATCCAGTTAACAAACTTTACTACTGTGACTTGTCTGAACTTCCTAATGGACTGGAAAGCTTTCAGAATGAAAATTCCCTCCTCCCATTTGTCAAACTTATTGATAACTTTGATGCACAATATGGAGTTATTGCAAATGATGACTCTGTGTTTACATTTCTAACTAATAAAGATGCTCCAAAATATAAACTAGTCCGAGTAGATTTGAAAGAACCAACTGCTTGGGTTGAAGTTCTCCAAGAATCTGAAAAAGACGTACTTGAGTCGGCATGTGCTGTAAACGGTAACCAACTAATAGTGAGTTACTTGAGTGATGTGAAGTATCTTCTTCAAGTAAGAGACTTAAAAACAGGTTCCTTGGTACATCAATTACCAATTGACATTGGCACAGTTTCTGAAATTTCTGCACGGCGTGAAGATAGTGTGGTTTTCATTAGCTTTACAAGCTTTCTAACTCCTGGTATCATCTATCAGTGCAACCTGGGAACAGAGATTCCTGATATGAAGATATTTCGTGAAATTGTTGTCCCTGGGTTTGATCGCTCCGGGTTTCATGTTAATCAGGTTTTCGTTCCTAGTAAAGATGGTATCAAGATCCCGATGTTCATTGTTGCCAGAAGGGATATTATTTTGGATGGTTCACACCCTTGTTTGTTATATGGATATGGTGGTTTTAACATCAGTATTACTCCATCTTTCAGTGTTAGTCGCATTGTACTCACAAGACATTTAGGTGTTGTTTTCTGCATAGCGAATATTCGTGGCGGTGGAGAATATGGGGAGGAATGGCATAAAGCAGGCTCCCTTGCAAAAAAGCAGAATTGCTTTGATGACTTCATTTCTGCAGCTGAATACCTTATATCTACTGGTTATACCCAACCTAGAAAGTTATGCATTGAAGGTGGAAGTAATGGTGGACTTCTTGTTGGCGCTTGTATAAATCAGAGACCTGATCTTTTTGGTTGTGCACTGGCTCATGTTGGTGTTATGGATATGCTACGGTTCCACAAATTTACAATAGGTCATGCTTGGACCTCGGATTATGGTTGTTCGGACAAGGAGGAAGAGTTTCATTGGCTAATCAAGTACTCACCATTACATAATGTCCGGCTACCATGGGAAGAGCATCCTGATCAATCAATTCAGTATCCATCAACCATGCTGTTGACAGCTGATCATGATGATCGAGTTGTGCCGCTGCACTCATTGAAGCTATTGGCGGTAAGTCTGCTTCTCATTACTCTACAAGTATAG 2049 0.4178 MGSFCALDEPLQYPVARRDDSVVDDYHGVKIADPYRWLEDPDAEEVKEFVEKQVQLTNSVLQKCETRAKLNQTITKLFDHPRYDAPFRRANKYFYFHNTGLQPQDILYVQDSLDGEPEVLLDPNALSEDGTVSLASLSVSEDAKYLAYGLSSSGSDWVTIKVMRIADKNVEPDTLSWVKFSSISWTHDGKGFFYSRYPAPKDGEVVDAGTETNSNLYHQLYYHFLGTDQSEDILCWRDLENPKYSFGGSVTDDGKYVLLYIGEGCDPVNKLYYCDLSELPNGLESFQNENSLLPFVKLIDNFDAQYGVIANDDSVFTFLTNKDAPKYKLVRVDLKEPTAWVEVLQESEKDVLESACAVNGNQLIVSYLSDVKYLLQVRDLKTGSLVHQLPIDIGTVSEISARREDSVVFISFTSFLTPGIIYQCNLGTEIPDMKIFREIVVPGFDRSGFHVNQVFVPSKDGIKIPMFIVARRDIILDGSHPCLLYGYGGFNISITPSFSVSRIVLTRHLGVVFCIANIRGGGEYGEEWHKAGSLAKKQNCFDDFISAAEYLISTGYTQPRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRFHKFTIGHAWTSDYGCSDKEEEFHWLIKYSPLHNVRLPWEEHPDQSIQYPSTMLLTADHDDRVVPLHSLKLLAVSLLLITLQV. 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00350 682 ProSitePatterns Prolyl endopeptidase family serine active site. 543 573 IPR002471 GO:0004252|GO:0006508
Seca4g00350 682 SUPERFAMILY Peptidase/esterase 'gauge' domain 10 429 - -
Seca4g00350 682 Gene3D alpha/beta hydrolase 22 672 IPR029058 -
Seca4g00350 682 SUPERFAMILY alpha/beta-Hydrolases 451 672 IPR029058 -
Seca4g00350 682 Gene3D - 81 440 - -
Seca4g00350 682 FunFam Prolyl endopeptidase 81 440 - -
Seca4g00350 682 FunFam Prolyl endopeptidase 402 677 - -
Seca4g00350 682 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 481 499 IPR002470 GO:0004252|GO:0006508
Seca4g00350 682 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 508 532 IPR002470 GO:0004252|GO:0006508
Seca4g00350 682 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 566 586 IPR002470 GO:0004252|GO:0006508
Seca4g00350 682 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 648 670 IPR002470 GO:0004252|GO:0006508
Seca4g00350 682 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 536 555 IPR002470 GO:0004252|GO:0006508
Seca4g00350 682 Pfam Prolyl oligopeptidase family 496 672 IPR001375 GO:0006508|GO:0008236
Seca4g00350 682 PANTHER PROLYL ENDOPEPTIDASE 9 672 - -
Seca4g00350 682 Pfam Prolyl oligopeptidase, N-terminal beta-propeller domain 14 429 IPR023302 GO:0004252
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00350 Seca-Chr4 5562134 5568411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00350 481 613 Carbohydrate Esterase AT5G36210 29.630 7.88e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00350 K01322 - gmx:100776544 1235.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00350 4 5562134 5568411 Seca4g00350 4 5562134 5568411 ECH
Seca4g00350 4 5562134 5568411 Seca4g00350 4 5562134 5568411 PCT