Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00347 ATGACGCTTAAGTTAGTGGGAGGAGCCACTGTTGGCGCCTTGCTCCTATGTGTTGCTATTTCTCTCTTTCACATTACTGAGGCTGAAGATCCATACAGGTTCTTCAACTGGAATGTTACTTATGGAGACATTTACCCACTTGGAGTTCGCCAAAGGGGAATACTAATCAACGGACAATTCCCTGGACCAGACATTCATTCTGTTACAAACGACAACCTCATTATCAATGTCTTCAACAGCTTGGATGAGCCCTTTCTCCTCTCCTGGAATGGGATCCAGCAGAGAAGGAACTCATTTGAAGATGGTGTGTTGGGAACAACATGCCCCATCCCACCAGGGAGAAACTTCACTTACATACTTCAAGTTAAAGATCAAATTGGGAGCTTTTACTATTTCCCTTCACTTGCATTCCACAAAGCAGCTGGTGGTTTTGGAGGCATTAGGATCCTCAGTAGGCCAAGAATTCCAGTCCCTTTCCCTGATCCTGCTGGTGATTACACTGTTCTCATTGGAGATTGGTACAAGTCCAACCACACGACTTTGAAGGCTCATCTTGATAGGGGCAAGAAGCTGCCTATGCCTGATGGAGTCCTCATAAATGGTCGCGGACCCAATGGAATATCTTTCAACGTAGAACAAGGTATGCACCCTATCTTTTTTATCTTTTTTTCGGTGTACAAGCAAAACTCAGGAAAGACTTACAGGCTTAGAATATCAAATGTGGGATTGCAACATTCCCTTAACTTCCGCATCCAGAACCACAAAATGAAGCTGGTGGAAGTTGAAGGAACACACACCCTTCAAACTACCTATTCCTCACTTGACGTTCATGTGGGTCAATCCTATTCAGTGCTAGTAACTGCTGATCAACCTGCTCAGGACTACTACATTGTGGTTTCCACACGATTCTCCTATAAGATCCTCACCACCACTGGAATACTTCGTTATAGCAACTCTGCAGGCCCAGTATCAGGCCCGCCCCCTGGTGGGCCTACAATTCAAATTGATTGGTCTTTGAACCAGGCCCGCTCAATCAGGACTAACCTTACAGCAAGTGGACCGAGGCCAAACCCACAAGGGTCCTACCATTATGGTCTTATAAACACAACCAAGACCATCATATTGGCCAGTTCAGCTGGTCAAGTAAATGGAAAGCAAAGATACGCAGTTAACAGTGTGTCTTATGTTGCCCCAGACACACCTCTCAAGCTCGCTGATTACTTCAAAATCTCTGGTGTTTTCCGTGTGGGAAGCATTTCTGAAAGACCCACTGGTGGTGGCATTTACCTTGACACATCTGTAATGCAAGCTGACTACAGAACTTTCGTTGAGATTGTCTTCCAAAACAACGAGAACATAGTTCAGAGCTATCATCTTGATGGCTACTCTTTCTTTGTGGTTGGTATGGATGGAGGACAGTGGACTACTGCTAGCAGGAACCAGTACAATCTCCGAGATGCGGTTGCACGTTGCACCACTCAGGTATATCCTTATTCATGGACTGCTATTTATGTTGCCCTTGACAATGTGGGAATGTGGAACTTGAGGTCTGAGTTTTGGGCACGACAATACCTTGGCCAACAGTTTTATTTGCGAGTTTACACAACATCAACCTCAATCAGAGACGAGTTTCCTGTTCCAAAGAATGCACTTCTCTGTGGTAAGGCAAGTGGGAGACACACGCGACCCTTTTGA 1695 0.4531 MTLKLVGGATVGALLLCVAISLFHITEAEDPYRFFNWNVTYGDIYPLGVRQRGILINGQFPGPDIHSVTNDNLIINVFNSLDEPFLLSWNGIQQRRNSFEDGVLGTTCPIPPGRNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRPRIPVPFPDPAGDYTVLIGDWYKSNHTTLKAHLDRGKKLPMPDGVLINGRGPNGISFNVEQGMHPIFFIFFSVYKQNSGKTYRLRISNVGLQHSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPAQDYYIVVSTRFSYKILTTTGILRYSNSAGPVSGPPPGGPTIQIDWSLNQARSIRTNLTASGPRPNPQGSYHYGLINTTKTIILASSAGQVNGKQRYAVNSVSYVAPDTPLKLADYFKISGVFRVGSISERPTGGGIYLDTSVMQADYRTFVEIVFQNNENIVQSYHLDGYSFFVVGMDGGQWTTASRNQYNLRDAVARCTTQVYPYSWTAIYVALDNVGMWNLRSEFWARQYLGQQFYLRVYTTSTSIRDEFPVPKNALLCGKASGRHTRPF. 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00347 564 Pfam Multicopper oxidase 165 318 IPR001117 -
Seca4g00347 564 PANTHER MULTI-COPPER OXIDASE 51 529 IPR045087 -
Seca4g00347 564 SUPERFAMILY Cupredoxins 366 555 IPR008972 -
Seca4g00347 564 FunFam Monocopper oxidase-like protein 163 354 - -
Seca4g00347 564 Gene3D - 32 153 IPR008972 -
Seca4g00347 564 SUPERFAMILY Cupredoxins 28 179 IPR008972 -
Seca4g00347 564 Gene3D - 365 560 IPR008972 -
Seca4g00347 564 SUPERFAMILY Cupredoxins 159 356 IPR008972 -
Seca4g00347 564 FunFam L-ascorbate oxidase homolog 32 153 - -
Seca4g00347 564 Pfam Multicopper oxidase 39 152 IPR011707 GO:0005507
Seca4g00347 564 CDD CuRO_3_AAO_like_1 398 518 IPR034275 GO:0005507
Seca4g00347 564 Pfam Multicopper oxidase 400 536 IPR011706 GO:0005507|GO:0016491
Seca4g00347 564 CDD CuRO_1_AAO_like_1 34 149 IPR034273 GO:0005507
Seca4g00347 564 Gene3D - 163 355 IPR008972 -
Seca4g00347 564 FunFam Monocopper oxidase-like protein 366 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00347 Seca-Chr4 5541114 5549350 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00347 - - gmx:100776222 1048.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00347 4 5541114 5549350 Seca4g00347 4 5541114 5549350 ECH
Seca4g00347 4 5541114 5549350 Seca4g00347 4 5541114 5549350 PCT