Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00339 ATGGGCTGTTGCCAATCTAACCTCTCCAAATATTCAACTCCTCATCAACACAGCTGCGTCGTCGTCGATAACGTTGCCTCTTCCTCCAACGGCGCCGAAAATGTATTAGGCGTGCCGGCGTTCTCGGAGTTCTCACTCTCCGACCTCAAAGCCGCCACCAACGGCTTCAGCTCCGATCATATAGTCTCTGAGAGCGGCGAGAAAGCCCCCAATGTAGTCTACAAAGGTCGCCTCCAGAACCATAACCGTCGCTGGATTGCAGTTAAGCGGTTTTCTAAATTGGCCTGGCCCGATCCCAAGCAGTTCGCTGATGAAGCTTGGGGTGTTGGGAAATTACGACACCAGAGGCTTGCTAATTTGATTGGTTATTGCTGTGATGGAGAAGAGAGGCTCCTCGTTGCAGAGTACATGCCCAATGACACTCTCGCCAAACATCTTTTCCACTGGGAAAATCAGACAATTGAGTGGGACATGCGGTTAAGAGTTGCCCTATCCATCACTGAAGCATTAGATTATTGTAGTAACAAAGGTTATCCATTGTACCATGACTTGAATGCTTACAGAGTTTTATTTGATGAGAATGGCGATCCCCGGCTTTCATGTTTTGGTTTGATTAAGAACAGCAGGGACGGGAAAAGTTATAGCACAAATCTTGCTTATACACCTCCTGAGTATCTGAGAAATGGGAGGGTGACTCCAGAAAGTGTTATCTTCAGCTTCGGGACTGTGTTATTGGATCTTCTAAGTGGCAAGCATATCCCTCCAAGTCATGCTCTTGACATGATAAGAGGTAAAAATATTCGACTCCTCATGGATTCACATTTGGAAGGAAACTTTTCAACGGAAGAGGCAACTGTAGTTTTTGATCTTGCCTCACAATGTTTGCAGTATGAACCTCGGGAGCGGCCCAAGACCAAGGACCTGGTTACAACACTTTCTTCAGTACAAACTAAACCCGATGTTCCATCGTATGTTATGCTCGGAATTCCAAAGCATGAGGAAGCACCTCCTACCCCACAGCATCCTCTATCTCCATTGGGTGATGCTTGTTCTCGTATGGACCTTACTGCCATTCATCAAATTTTGTTGATGACAAACTACAGAGATGACGAAGGGTGTAATGAGGTAATGGGGTACTTACTTGAATTATCTTTCCAAGAGTGGACGCAGCAAACGAGGGATATGTTAGATGCAAGAAAGCGTGGTGATTTGGCATTTCGGGACAAGGATTTTAAAACTTCAATTGAGTGTTACTCTCAGTTCATTGATATTGGAACCATTGTTTCGCCAACTGTCTATGCACGGAGAAGTGTTTGCTATCTCTTTTGCGATCAACCAGATGCTGCTCTCAGAGATGCAATGCAAGCTCAATGTGTCTATCCTGATTGGTCCACAGCATTTTACATGCAGGCGGTCGCTCTTTCCAAATTAAACATGGAGAAAGATGCAGCTGACATGCTGAGTGAGGCCGCTGCTCTCGAAGAGAAAAGGCAACGAGGAGGGAAATGA 1509 0.4573 MGCCQSNLSKYSTPHQHSCVVVDNVASSSNGAENVLGVPAFSEFSLSDLKAATNGFSSDHIVSESGEKAPNVVYKGRLQNHNRRWIAVKRFSKLAWPDPKQFADEAWGVGKLRHQRLANLIGYCCDGEERLLVAEYMPNDTLAKHLFHWENQTIEWDMRLRVALSITEALDYCSNKGYPLYHDLNAYRVLFDENGDPRLSCFGLIKNSRDGKSYSTNLAYTPPEYLRNGRVTPESVIFSFGTVLLDLLSGKHIPPSHALDMIRGKNIRLLMDSHLEGNFSTEEATVVFDLASQCLQYEPRERPKTKDLVTTLSSVQTKPDVPSYVMLGIPKHEEAPPTPQHPLSPLGDACSRMDLTAIHQILLMTNYRDDEGCNEVMGYLLELSFQEWTQQTRDMLDARKRGDLAFRDKDFKTSIECYSQFIDIGTIVSPTVYARRSVCYLFCDQPDAALRDAMQAQCVYPDWSTAFYMQAVALSKLNMEKDAADMLSEAAALEEKRQRGGK. 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00339 502 Pfam Protein tyrosine and serine/threonine kinase 72 312 IPR001245 GO:0004672|GO:0006468
Seca4g00339 502 FunFam probable serine/threonine-protein kinase At4g35230 393 502 - -
Seca4g00339 502 FunFam probable serine/threonine-protein kinase At4g35230 31 136 - -
Seca4g00339 502 Gene3D Transferase(Phosphotransferase) domain 1 138 328 - -
Seca4g00339 502 SUPERFAMILY Protein kinase-like (PK-like) 36 322 IPR011009 -
Seca4g00339 502 SUPERFAMILY TPR-like 398 495 IPR011990 GO:0005515
Seca4g00339 502 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 2 499 IPR045845 GO:0004672|GO:0009742
Seca4g00339 502 ProSiteProfiles Protein kinase domain profile. 59 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g00339 502 Gene3D Tetratricopeptide repeat domain 394 500 IPR011990 GO:0005515
Seca4g00339 502 FunFam probable serine/threonine-protein kinase At5g41260 138 329 - -
Seca4g00339 502 Gene3D Phosphorylase Kinase; domain 1 32 136 - -
Seca4g00339 502 Coils Coil 476 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00339 Seca-Chr4 5476947 5482768 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00339 40 339 Glycoside Hydrolase AT3G07070 33.639 4.49e-43 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Seca4g00339 PK_Tyr_Ser-Thr 1.1e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00339 K14500 - vvi:100245381 856.284