Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00328 ATGAGCTGCTTTTCTTGCCTCTTTTCTCGTCGGAAAGATGTCAGTAGGGTTGAAGTTGATAATGGCACTCGATCTGCTACTTCTTCAGGGAATGGGGGAGTCAATGCTGCCGCTACTGATAAGGAGGGTGAAAGGAAGAAAGAATCCTCAGAGGGGAAGGGGAAGAGTGGGAGCAGTAGCAAAAGCAGTACGGCAGCAGCTAGTTTTGGATTTCGTGAGCTTGCAGCGGCAACAAGAGGTTTTAAGGAAGTGAACTTGATTGGGGAAGGTGGTTTTGGAAGAGTTTACAAGGGTCGTCTCTCTACAGGAGAGGCAAGTTATAGGGTTTTTGGTCATTTGAATATTTTCAGTTGTCTTATTATTATTATTATTATGAATTATAAATTCTTTTCTGAAAATAATATTTATCTGCAGGTTGTTGCCATAAAACAATTAAATCATGATGGTCATCAAGGTTTTCAGGAATTTGTGACAGAGGTTCTTATGTTAAGCCTGCTTCACCATTCTAATCTTGTTAAGTTAATTGGCTACTGCACTGATGGAGATCAAAGGCTTTTGGTTTATGAATACATGCCTATGGGATCCCTGGAAGACCATCTTTTTGATCTTACTCAAGACAAAGAACCCCTAAGTTGGAGTGCCCGAATGAAGATTGCTGTTGGAGCTGCTCGGGGCCTTGAGTATCTGCATTGTAAGGCAGATCCGCCTGTTATTTATCGTGACTTGAAATCTGCAAACATCTTGTTAGACAATGAATTCAACCCAAAACTGTCAGATTTTGGGCTTGCAAAACTTGGACCTGTGGGAGACAATACCCATGTTTCAACCAGAGTGATGGGTACATATGGCTACTGTGCACCAGAGTATGCAATGAGTGGCAAATTAACTCTTAAATCTGATATCTACAGCTTTGGTGTGGTTTTGTTGGAGTTGATCACTGGACGTAGGGCAATAGATTCTAGTAGAAGACCAGGAGAGCAAAACTTAGTTTCTTGGTCTCGCCCATTTTTCAGTGACCGGAGAAAGTTTGTACATATGGTTGATCCACTTTTGCAAGGAAACTTCCCCTTACGCTGTTTGCATCAGGCAATTGCTATAACTGCTATGTGTCTCCAGGAGCAACCAAAATTCCGTCCACTTATCAGTGATATTGTTGTTGCACTGGAATACCTAGCTTCTCAGACTCAGAGTATCCCAGAAGTCCATAGACATGGTACAGAAATAGACAGAAATTAA 1236 0.4167 MSCFSCLFSRRKDVSRVEVDNGTRSATSSGNGGVNAAATDKEGERKKESSEGKGKSGSSSKSSTAAASFGFRELAAATRGFKEVNLIGEGGFGRVYKGRLSTGEASYRVFGHLNIFSCLIIIIIMNYKFFSENNIYLQVVAIKQLNHDGHQGFQEFVTEVLMLSLLHHSNLVKLIGYCTDGDQRLLVYEYMPMGSLEDHLFDLTQDKEPLSWSARMKIAVGAARGLEYLHCKADPPVIYRDLKSANILLDNEFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRRAIDSSRRPGEQNLVSWSRPFFSDRRKFVHMVDPLLQGNFPLRCLHQAIAITAMCLQEQPKFRPLISDIVVALEYLASQTQSIPEVHRHGTEIDRN. 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00328 411 CDD STKc_IRAK 87 389 - -
Seca4g00328 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 237 249 IPR008271 GO:0004672|GO:0006468
Seca4g00328 411 FunFam Serine/threonine-protein kinase PBS1 191 406 - -
Seca4g00328 411 PANTHER OS07G0668900 PROTEIN 26 104 - -
Seca4g00328 411 MobiDBLite consensus disorder prediction 39 54 - -
Seca4g00328 411 Pfam Protein tyrosine and serine/threonine kinase 85 387 IPR001245 GO:0004672|GO:0006468
Seca4g00328 411 MobiDBLite consensus disorder prediction 20 35 - -
Seca4g00328 411 ProSiteProfiles Protein kinase domain profile. 81 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g00328 411 SMART serkin_6 81 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g00328 411 SUPERFAMILY Protein kinase-like (PK-like) 69 396 IPR011009 -
Seca4g00328 411 Gene3D Phosphorylase Kinase; domain 1 40 109 - -
Seca4g00328 411 MobiDBLite consensus disorder prediction 16 63 - -
Seca4g00328 411 Gene3D Phosphorylase Kinase; domain 1 127 191 - -
Seca4g00328 411 Gene3D Transferase(Phosphotransferase) domain 1 192 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00328 Seca-Chr4 5245907 5249264 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00328 1 393 Glycoside Hydrolase AT3G07070 55.276 2.20e-149 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Seca4g00328 PK_Tyr_Ser-Thr 9.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00328 - - gmx:100796595 570.466