Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00327 ATGGGAAACTGTTTCGGAAAGCCAGATGATGACAACAAGAAGAAGATTCACAGTAAGCAGACTACTACTTCTCCTGCAGAAAGAAGCAATGAGAAGGAAAGGGTTTCAGATGGAGAAAAGAGTAGAGGGAAGATCGTTACGCCGAATCTGAAAATGTTCACATTGGATGAGTTGAAAAGTGCCACAAGAAACTTCAGACCAGACACAGTGGTTGGGGAGGGTGGTTTTGGGCGTGTTTTCAAAGGATGGATTGACCCTAACACCTTCAAGCCTTCCAGAGTTGGCGTTGGAATCCCCGTTGCCGTCAAGAAGTCCAACCCTGATAGCCTCCAAGGTCTACAAGAATGGCAGAGTGAAGTGAAGTTTTTGGGGAAGTTCTCTCATCCAAACCTGGTTAAACTACTTGGCTTCTGCTGGGAGGAAAATCAATTCCTGCTTGTCTATGAATACATGCAAAAGGGCAGCTTGGAAACCCACCTCTTCAGAAGAGGCCCTGAACCACTTTCGTGGGATATAAGGCTCAAGATAGCCATAGGAGCTGCCAGAGGTCTCGCTTTCTTGCATACATCAGAAAAATCTGTCATCTATAGAGACTTCAAATCCTCCAACATTTTGCTTGACCAGAATTTTAATGCAAAGCTGTCAGACTTTGGGTTGGCAAAGTTGGGCCCAGTCAACGGTAGATCCCACATAACCACGCGGGTCATGGGCACCTATGGTTATGCTGCCCCTGAGTACATGGCCACAGGTCCTTTCTTTTTCTTACTTAAACAATTACATATATTCAGTCATCTCTATGTGAAAAGCGACGTATATGGATTTGGTGTTGTTCTGCTAGAATTGTTAACAGGCTTAGCAGCACTGGACACAAACCGGCCAACGGTTGAGCAGAATTTGGTGGAATATAGTAAGCCATATCTAAGTGACAAAAAGAAACTAAAAAGGATAATGGACCCAAGGATGGACGAACAGTATTCAATAATAGCTGCTCTTCAAATAGCCCACCTTATTCTGAAGTGTTTAGAATCTGACCCAAAAAACAGACCGTCTATGGAGGAGGTTTTGGGAATCTTAGAGAAGGCCCAAAACATCAAATATAAGCCCAAAGCGAAGAAAGCCAGTGCAGTGCATCAAAGAAAGAGATCACCAGAGGAGCATCCCACAGAAAATCAACTTCGCTCTCCTATTCATCACAACAACAATGGTTACTCCAAATCAAGAACTCATTCCCCCCAATAG 1239 0.4399 MGNCFGKPDDDNKKKIHSKQTTTSPAERSNEKERVSDGEKSRGKIVTPNLKMFTLDELKSATRNFRPDTVVGEGGFGRVFKGWIDPNTFKPSRVGVGIPVAVKKSNPDSLQGLQEWQSEVKFLGKFSHPNLVKLLGFCWEENQFLLVYEYMQKGSLETHLFRRGPEPLSWDIRLKIAIGAARGLAFLHTSEKSVIYRDFKSSNILLDQNFNAKLSDFGLAKLGPVNGRSHITTRVMGTYGYAAPEYMATGPFFFLLKQLHIFSHLYVKSDVYGFGVVLLELLTGLAALDTNRPTVEQNLVEYSKPYLSDKKKLKRIMDPRMDEQYSIIAALQIAHLILKCLESDPKNRPSMEEVLGILEKAQNIKYKPKAKKASAVHQRKRSPEEHPTENQLRSPIHHNNNGYSKSRTHSPQ. 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00327 412 Gene3D Phosphorylase Kinase; domain 1 35 150 - -
Seca4g00327 412 CDD STKc_IRAK 71 360 - -
Seca4g00327 412 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 151 372 - -
Seca4g00327 412 Gene3D Transferase(Phosphotransferase) domain 1 151 384 - -
Seca4g00327 412 SUPERFAMILY Protein kinase-like (PK-like) 45 359 IPR011009 -
Seca4g00327 412 FunFam Serine/threonine-protein kinase BIK1 31 150 - -
Seca4g00327 412 MobiDBLite consensus disorder prediction 393 412 - -
Seca4g00327 412 Pfam Protein tyrosine and serine/threonine kinase 69 355 IPR001245 GO:0004672|GO:0006468
Seca4g00327 412 MobiDBLite consensus disorder prediction 1 42 - -
Seca4g00327 412 ProSitePatterns Protein kinases ATP-binding region signature. 71 104 IPR017441 GO:0005524
Seca4g00327 412 MobiDBLite consensus disorder prediction 377 392 - -
Seca4g00327 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Seca4g00327 412 ProSiteProfiles Protein kinase domain profile. 65 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g00327 412 MobiDBLite consensus disorder prediction 7 41 - -
Seca4g00327 412 PANTHER OS01G0588500 PROTEIN-RELATED 24 362 - -
Seca4g00327 412 MobiDBLite consensus disorder prediction 366 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00327 Seca-Chr4 5180143 5183224 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00327 30 358 Glycoside Hydrolase AT3G07070 45.210 5.17e-90 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca4g00327 PK_Tyr_Ser-Thr 2.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00327 - - aprc:113865973 605.905