Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00325 ATGAAAATTGTTAACTTGCAGGTTGTTGATCTCAGAAGCTCGAAGCATTCAAGTATTAAGAATGTGAAGGCAAGCAACCAGTCCTATGAAGCTGCACTACCCGAGATTCAAGAGGTGCTGAGATCAGCATGTGAAATGCACAAATTACCTTTGGCTCAAACTTGGGTCTCATGCATCCAACAAGGCAAAGATGGGTGCAGACACAATGAAGATAACTATTTACACTGTATATCTCCTGTGGAGCAAGCTTGCTATGTTGGTGATCAATCTGTCAGGTTTTTTCATGAGGCTTGCATTGAGCATCACTTGTTAAAAGGTCAAGGTGTTGCTGGGGGAGCTTTTATGACAAATCAACCATGCTTCTCAACTGATATTACTTCCTTAAGCAAAACAGACTATCCACTATCTCATCATGCGAGGTTGTTTGGATTGAGGGCTGCAGTTGCCATACGCCTCAGAAGTATCTATAGTAATACAGATGACTATGTTCTCGAGTTCTTCTTGCCTGTAGATTGCATTGACAGTGAAGAACAGAAAAAGATGCTTACATCATTGTCCATGATCATACAAAGGGTTTGCCACAGCTTGCGGGTTATAAGAGACAAGGAGTTGGAGGAAACTGACTTATCCACTGATGAAGTAATAGCCCTTGCAGATAGTGGATTTACTAGGACTGCAATTTGTTCAGAACTCCAAAACAGAATGATGGTTCCCTCATTGGGTACTGAAGAAAACTCAAGTAGAACAATGAGTAGAAAATTCTCTGATCTAAGGCAGCAACAAGAAAATCTTATTTTAAAAGGAAACCTTGACTGTGGTAGGGAGTCTTCTACCTTTGTTGAGGGTAACTTGTCAAGTGTGGGAATAAGTAAAACGGGAGAGAAAAGACGGGCCAAAGCAGATAAAACTATCACTCTGCAAGTTCTTAGGCAATATTTTGCTGGAAGCCTTAAAGATGCTGCTAAGAATATCGGTGTTTGTACTACAACTCTGAAAAGGATCTGCCGGCAACATGGTATAAAGCGTTGGCCTTCTCGAAAGATCAAAAAGGTTGGTCACTCCTTACAGAAACTTCAACTTGTCATTGACTCAGTTCAAGGTGCCTCTGGTGCATTTCAAATCGATTCCTTCTACTCAAAATTCCCGGACCTAGCTTCTCCAAACATATCAGGAACCAGCTTGGTCTCAGCTTTGAATCAAAGTGATAATCCAAACTCATTAAGCATACAGCCAGATCCTGGCTCATTGAGTCCAGAAGGTGCATCAAAATCACCCTCTTCCTCATGCAGTCAGAGTTCCTTCTCAAGCCATTCCTGTTCCAGCATGTCAGAGCAACAACCTCACACAAGTAATGTTGCTGGTAACAAAGATTCTACAATTGGTGAAGATTCTGTTGATGTTGTGTTGAAGAGGATAAGAAGTGAAGCAGAGCTTAAAAGCCTTATTCAAGACAGAACAAAGCTCTTGCCAAGATCCCTAAGCCAGGAAACACTTGGAGAACACCCTAAAACAAATTATCACAGGCCATTTATGAAAACCAGTGGCAAGGAGGATGCTCACAGGGTAAAAGTAACATATGGAGATGAGAAAAGCCGGTTTCGGATGCCAAAGAATTGGGGTTATGAAGATCTTTTGCAAGAAATTGGTAGGAGATTCAGTGTCAGTGACATGAGCAAATTTGATATCAAATATTTGGATGATGATTGTGAGTGGGTGTTACTAACCTGTGATGCTGATTTAGAAGAATGCATTGATGTTTGTCAATCTTCTGAGAGTAGTACCATCAAACTTTGCCTCCAAGCTTCTAGACATTGTATGGGAAGTTCTTTTTAG 1833 0.4103 MKIVNLQVVDLRSSKHSSIKNVKASNQSYEAALPEIQEVLRSACEMHKLPLAQTWVSCIQQGKDGCRHNEDNYLHCISPVEQACYVGDQSVRFFHEACIEHHLLKGQGVAGGAFMTNQPCFSTDITSLSKTDYPLSHHARLFGLRAAVAIRLRSIYSNTDDYVLEFFLPVDCIDSEEQKKMLTSLSMIIQRVCHSLRVIRDKELEETDLSTDEVIALADSGFTRTAICSELQNRMMVPSLGTEENSSRTMSRKFSDLRQQQENLILKGNLDCGRESSTFVEGNLSSVGISKTGEKRRAKADKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASGAFQIDSFYSKFPDLASPNISGTSLVSALNQSDNPNSLSIQPDPGSLSPEGASKSPSSSCSQSSFSSHSCSSMSEQQPHTSNVAGNKDSTIGEDSVDVVLKRIRSEAELKSLIQDRTKLLPRSLSQETLGEHPKTNYHRPFMKTSGKEDAHRVKVTYGDEKSRFRMPKNWGYEDLLQEIGRRFSVSDMSKFDIKYLDDDCEWVLLTCDADLEECIDVCQSSESSTIKLCLQASRHCMGSSF. 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00325 610 SMART PB1_new 519 602 IPR000270 GO:0005515
Seca4g00325 610 MobiDBLite consensus disorder prediction 401 459 - -
Seca4g00325 610 Pfam RWP-RK domain 303 351 IPR003035 -
Seca4g00325 610 Gene3D - 520 601 - -
Seca4g00325 610 ProSiteProfiles PB1 domain profile. 519 602 IPR000270 GO:0005515
Seca4g00325 610 MobiDBLite consensus disorder prediction 401 458 - -
Seca4g00325 610 ProSiteProfiles RWP-RK domain profile. 290 371 IPR003035 -
Seca4g00325 610 CDD PB1_NLP 520 601 IPR034891 -
Seca4g00325 610 PANTHER PROTEIN NLP8 6 609 IPR045012 GO:0003700
Seca4g00325 610 Pfam PB1 domain 520 600 IPR000270 GO:0005515
Seca4g00325 610 SUPERFAMILY CAD & PB1 domains 511 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00325 Seca-Chr4 5078069 5081652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00325 6 604 NLP Transcription Factor Family AT1G20640 51.236 1.03e-175 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Seca4g00325 PB1 7.7e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00325 - - gmx:100785135 933.324