Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00295 ATGGCATGCTCTGGACACAAGATAACTGCTAGGCAGCGGTGGACTCCAACGCCTCTGCAGCTTCAAATACTGGAGCGTATTTTTGATGAAGGCAATGGCACTCCAAGCAAACAGAAGATCAAAGATATAACCATAGAATTGGGGCAACATGGTCAAATATCAGAGACAAATGTTTATAATTGGTTCCAGAACAGAAGAGCTCGTTCAAAGCGGAAGCAACTAGCTCCTGCACCAAGTCATGTTGAACCAGAGGCAGAGGCAGAGCCAGAGACAGAAGTTGAGTCTCCAAAAGAGAAAAAGAATCGTGCAGAAAATGTTCAAGTTCAATCCTATGAGGATACTTCATCACCTCATAGGGATAGGGATATGTACATCCAGAGTCCTGACATAGGATTTGAGCAATTGTTGGGTAAAATAGAAGCTGCAGGCTGGTGGACTCAACATTGTTGA 450 0.44 MACSGHKITARQRWTPTPLQLQILERIFDEGNGTPSKQKIKDITIELGQHGQISETNVYNWFQNRRARSKRKQLAPAPSHVEPEAEAEPETEVESPKEKKNRAENVQVQSYEDTSSPHRDRDMYIQSPDIGFEQLLGKIEAAGWWTQHC. 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00295 149 Gene3D - 12 76 - -
Seca4g00295 149 Pfam Homeodomain 11 71 IPR001356 GO:0003677
Seca4g00295 149 CDD homeodomain 11 73 IPR001356 GO:0003677
Seca4g00295 149 SUPERFAMILY Homeodomain-like 10 73 IPR009057 -
Seca4g00295 149 ProSiteProfiles 'Homeobox' domain profile. 7 72 IPR001356 GO:0003677
Seca4g00295 149 SMART HOX_1 9 76 IPR001356 GO:0003677
Seca4g00295 149 MobiDBLite consensus disorder prediction 67 123 - -
Seca4g00295 149 MobiDBLite consensus disorder prediction 83 106 - -
Seca4g00295 149 PANTHER WUSCHEL-RELATED HOMEOBOX 13 1 133 IPR044559 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00295 Seca-Chr4 4688219 4690106 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00295 1 130 Wox Gene Family AT4G35550 56.028 2.88e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Seca4g00295 Homeodomain 4.7e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00295 - - gmx:100820530 224.942
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00295 4 4688219 4690106 Seca4g00295 4 4688219 4690106 ECH