Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00292 ATGGCTGCAAGCTGGGATGGAAGTAATGACCCTGGCAGCCAGTCTGATGATAGCTTTCATTTTGAGAGGTTGCACATCGAGCCTATTTATGATGCTTTTGTATGTCCTTTGACGAAGCAAGTTATGCGCGATCCTGTTACTTTAGAAAATGGACAGACTTTTGAACGTGAAGCAATTGAAAAATGGTTTAAGGAATGCAAGGAGAGTGGACGGAAACTGGTTTGCCCTTTGACTCTGCAAGAATTAAGAAGCACTGAACTGAATCCAAGTATGGCTTTGCGTAACACCATTGAAGAGTGGACTACCAGGAATGAAGCTGCACAGCTGGATATGGCTCGCCGTTCCTTGAATATGGGGAGTCCAGAAAATGAAACTCTTCAGGCCTTAAAGTATGTCCAGCACCTCTGTCGAAGAAGTCGGTCGAATAAGCACAATATCCGCAATGCAGGGCTTATACCAATGATCGTTGACATGCTGAAGAGTAGCAGCCGTAAGATTCGTTGTAGAGCTTTGGAAACCCTTAGAATTGTGGTTGAGGAAGATGATGAGAATAAGTTTCTCTTTGTTCCAAAGGAATTGTTGGCCGAAGGGGACACTGTACGTACGGTCGTAAAATTCCTTTCACACGAGCTTTCTAAAGAAAGAGAGGAAGCTGTCTCCTTGCTTTATGAGCTCTCGAAATCTGAAACCCTTTGTGAGAAGATTGGTTCAATCAATGGAGCTATTCTTATATTAGTTGGAATGACAAGCAGCAAATCAGAAGATCTTTCCACTGTTGAGAAGGCTGATAAAACATTGGAGAATCTGGAGAAGTGTGAGAATAATGTGCGGCAGATGGCTGAAAATGGTAGATTGCAGCCTCTACTGACCCAGCTCCTTGAAGGTCCACCAGAAACCAAACTCTCCATGGCTGGATTCCTTGGTGAGCTGGCTTTGAACAATGATGTTAAAGTCATTGTTGCTAGAACTGCAGGTCCGTCTCTGATCAATATAATGAAAAGTGGTAATTTGCAGTCAAGAGAAGCTGCGCTGAAGGCACTAAATCAGATATCATCATGTGATCCAAGCGCAAAGGTTTTAATAGAAGCTGGAATACTTTCCCCTCTTGTCAATGACCTTTTTGCAGTGGGTCCTAATCTGCTTCCCACGCGATTAAAAGAGGTCTCTGCTACAATTCTTGCCAGTGTTGTTAACTCAGGAGAAGATTTTGATTCCATTCCAGTTGGACCTGATCACCAAACTCTGGTCTCAGAGGATATAGTTCATAATCTACTCCATCTTATAAGCAACACCGGTCCAGCAATCGAGTGCAAACTTCTCCAAGTTCTTGTTGGACTTACTAGTTCTCCAACTACAGTGCTGAGTGTTGTTTCTGCTATCAAAAGCTCTGGTGCCACTATCAGTCTAGTCCAATTCATTGAGGCACCACAGAAAGATCTGCGTGTAGCTTCCTTAAGACTTCTTCAGAATTTGTCTCCCCACATGGGTCAGGAACTAGCTGATGCACTACGTGGCTCAGTTGGACAGCTTGGTAGTCTAGTTAAAGTGATATCAGAAAATACAGGAATCACTGAAGAGCAGGCAGCAGCTGTTGGCCTTTTAGCTGATCTACCTGAAAGGGATTTGGGCCTCACAAGGCAGCTACTGGATGAAGGTGCCTTTCTGACAGTCATAAATAGGGTGATTGCCATCAGGCAGGGAGAGATCAGAGGCGCTCGCTTTGTGACACCAGTTCTTGAAGGGCTTGTGAAGATTGTTGCAAGGGTTACATATGTTTTGGCTGATGAGCCTGATGCCATTGCACTCTGCCGTGATCACAATCTTGCTGCACTTTTTATTGAACTGCTTCAGGCCAACGGACTCGATAATGTACAGATGGTTTCTGCTACAGCTTTGGAGAATCTATCGCAAGAATCAAGAAATTTAACCAAATTGCCCGAGTTGCCACCGCCAGGTTTTTGTGCTTCAATCTTTTCTTGCTTCAGCAAACAGCCAGTCATTACTGGATTGTGTAGGATCCACCGAGGGAGGTGTTCTTTGAAAGAAACATTTTGTCTTTATGAAGGGCAGGCAGTCCTTAAGTTAGTAGCTCTACTGGATCACACAAATGCGAGTGTGGTTGAGGCGGCACTTGCAGCCTTATCTACTATAATAGATGATGGAGTAGATATTGAACAAGGAGTACTGGTTTTGTGTGAAGCAGAGGGAGTGAAACCTATACTTGATGTGTTACTTGAGAAACGGACAGAAACTCTGAGGAGGAGAGCAGTTTGGGCAGTGGAGAGGCTATTGAGAACAGATGATATAGCCTATGAAGTTTCTGGAGATCAAAATGTGAGTACTGCACTTGTGGATGCTTTCCAGCATGGTGACTATCGAACTAGACAGATTGCTGAGCGTGCTCTCAAGCATGTTGATAAGATACCCAACTTCTCAGGAATATTTCCTAACATGGGATGA 2460 0.4402 MAASWDGSNDPGSQSDDSFHFERLHIEPIYDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECKESGRKLVCPLTLQELRSTELNPSMALRNTIEEWTTRNEAAQLDMARRSLNMGSPENETLQALKYVQHLCRRSRSNKHNIRNAGLIPMIVDMLKSSSRKIRCRALETLRIVVEEDDENKFLFVPKELLAEGDTVRTVVKFLSHELSKEREEAVSLLYELSKSETLCEKIGSINGAILILVGMTSSKSEDLSTVEKADKTLENLEKCENNVRQMAENGRLQPLLTQLLEGPPETKLSMAGFLGELALNNDVKVIVARTAGPSLINIMKSGNLQSREAALKALNQISSCDPSAKVLIEAGILSPLVNDLFAVGPNLLPTRLKEVSATILASVVNSGEDFDSIPVGPDHQTLVSEDIVHNLLHLISNTGPAIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFIEAPQKDLRVASLRLLQNLSPHMGQELADALRGSVGQLGSLVKVISENTGITEEQAAAVGLLADLPERDLGLTRQLLDEGAFLTVINRVIAIRQGEIRGARFVTPVLEGLVKIVARVTYVLADEPDAIALCRDHNLAALFIELLQANGLDNVQMVSATALENLSQESRNLTKLPELPPPGFCASIFSCFSKQPVITGLCRIHRGRCSLKETFCLYEGQAVLKLVALLDHTNASVVEAALAALSTIIDDGVDIEQGVLVLCEAEGVKPILDVLLEKRTETLRRRAVWAVERLLRTDDIAYEVSGDQNVSTALVDAFQHGDYRTRQIAERALKHVDKIPNFSGIFPNMG. 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00292 819 Coils Coil 262 282 - -
Seca4g00292 819 Pfam U-box domain 31 105 IPR003613 GO:0004842|GO:0016567
Seca4g00292 819 CDD RING-Ubox_PUB 30 87 IPR045210 -
Seca4g00292 819 Gene3D - 317 492 IPR011989 -
Seca4g00292 819 SUPERFAMILY ARM repeat 459 807 IPR016024 -
Seca4g00292 819 SMART arm_5 596 637 IPR000225 GO:0005515
Seca4g00292 819 SMART arm_5 313 352 IPR000225 GO:0005515
Seca4g00292 819 SMART arm_5 272 312 IPR000225 GO:0005515
Seca4g00292 819 SMART arm_5 678 719 IPR000225 GO:0005515
Seca4g00292 819 SMART arm_5 139 179 IPR000225 GO:0005515
Seca4g00292 819 SMART arm_5 723 765 IPR000225 GO:0005515
Seca4g00292 819 SMART arm_5 452 493 IPR000225 GO:0005515
Seca4g00292 819 SMART arm_5 353 398 IPR000225 GO:0005515
Seca4g00292 819 SUPERFAMILY RING/U-box 23 110 - -
Seca4g00292 819 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 22 815 - -
Seca4g00292 819 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 105 IPR013083 -
Seca4g00292 819 Gene3D - 106 316 IPR011989 -
Seca4g00292 819 Gene3D - 578 808 IPR011989 -
Seca4g00292 819 ProSiteProfiles U-box domain profile. 28 107 IPR003613 GO:0004842|GO:0016567
Seca4g00292 819 SMART Ubox_2 32 100 IPR003613 GO:0004842|GO:0016567
Seca4g00292 819 SUPERFAMILY ARM repeat 120 450 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00292 Seca-Chr4 4664465 4669288 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00292 2 819 U-box Gene Family AT1G76390 65.122 0.0 1042
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00292 - - gmx:100789746 1442.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00292 4 4664465 4669288 Seca4g00292 4 4664465 4669288 ECH