Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00289 ATGATAATTGCCAATGCTGGGGATTGTCGAGCTGTACTAGGGAGGCGAGGTAGAGCAATTGAGATGTCAGAAGACCAAAAACCAAATTGCATTTCAGAAAGGCTAAGGATTGAGAAACTTGGTGGAGTGGTCTATGATGGATACTTGAATGGCCAGTTATCTGTTTCCCGTGCTTTAGGAGACTGGCACATGAAGGGTCCCAAGGGTTCTCCCTGCCCTTTGAGTGCAGAACCAGAGTTGCAGGAAATCTGCTTGACTGAGGATGATGAGTTCTTGATTATGGGCTGTGACGGTCTGTGGGATGTAATGAGCAACCAATGTGCTGTGACCATGGCAAGGAAAGAATTGATGATACATAATGATCCTCAAAGGTGTTCTAGAGAGCTGGTCAGAGAGGCTCTTAAGCGTAACTCGTGTGATAATTTAACAGTTATTGTGATATGTTTCTCCCCAGATCCACCTCCTAGGATAGAGACACCTCCTTCTCGAGTCAGGAGGAGTATATCAGCAGAAGGCCTCAATTTACTTAAGGGTGTATTGGACTGTTAG 549 0.4536 MIIANAGDCRAVLGRRGRAIEMSEDQKPNCISERLRIEKLGGVVYDGYLNGQLSVSRALGDWHMKGPKGSPCPLSAEPELQEICLTEDDEFLIMGCDGLWDVMSNQCAVTMARKELMIHNDPQRCSRELVREALKRNSCDNLTVIVICFSPDPPPRIETPPSRVRRSISAEGLNLLKGVLDC. 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00289 182 PANTHER PROTEIN PHOSPHATASE 2C 1 147 IPR015655 GO:0004722|GO:0006470
Seca4g00289 182 SMART PP2C_4 1 147 IPR001932 -
Seca4g00289 182 ProSiteProfiles PPM-type phosphatase domain profile. 1 149 IPR001932 -
Seca4g00289 182 CDD PP2Cc 1 149 IPR001932 -
Seca4g00289 182 SUPERFAMILY PP2C-like 2 151 IPR036457 -
Seca4g00289 182 Gene3D - 1 162 IPR036457 -
Seca4g00289 182 Pfam Protein phosphatase 2C 1 141 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00289 Seca-Chr4 4632233 4632781 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00289 1 181 PP2C-type Phosphatase Gene Family AT2G33700 86.264 7.78e-115 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00289 K14803 - gmx:100778015 359.762