Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00288 ATGTTAGAAGAAGACAAAGACAATGCATTCGTGGTTGAAGATGAGAAATCAGGAGAATTGACTAATCTAAAACGAACGATGAAGGGTAAGCCTCCACGCCATGTCTCGGGTATGAGACACAGCATTAGCACCACCAGATTGCTAACTGCTGGAGATTTGAGTTTGGACGTGGAGGTCACTGGGAGCAAGTCATCTTCTGAAGACAAGACAGAGTTTCTACCCATATATCGGTCAGGAAGTTGTGCTGAAAGAGGACCTAAACAATATATGGAAGATGAACACATATGCGTAGATAATCTTATTCAACATATGGATTCTGCTTCAAATATTCCTTTTCCTGGAGCTTTCTATGGGGTGTTTGATGGTCATGGAGGTACAGATGCAGCTTTGTTTATAAGAAATAACATCCTTAGATTCATAGTTGAGGACTCCCATTTTCCAACATGCGTGGGGAAGGCAATTACAAGTGCATTTCTGAAAGCTGATTATGCATTTGCAGATTCTAGTTAG 510 0.4098 MLEEDKDNAFVVEDEKSGELTNLKRTMKGKPPRHVSGMRHSISTTRLLTAGDLSLDVEVTGSKSSSEDKTEFLPIYRSGSCAERGPKQYMEDEHICVDNLIQHMDSASNIPFPGAFYGVFDGHGGTDAALFIRNNILRFIVEDSHFPTCVGKAITSAFLKADYAFADSS. 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00288 169 Gene3D - 69 169 IPR036457 -
Seca4g00288 169 MobiDBLite consensus disorder prediction 1 37 - -
Seca4g00288 169 ProSitePatterns PPM-type phosphatase domain signature. 116 124 IPR000222 GO:0043169
Seca4g00288 169 PANTHER PROTEIN PHOSPHATASE 2C 63 167 IPR015655 GO:0004722|GO:0006470
Seca4g00288 169 MobiDBLite consensus disorder prediction 1 23 - -
Seca4g00288 169 SUPERFAMILY PP2C-like 71 167 IPR036457 -
Seca4g00288 169 Pfam Protein phosphatase 2C 77 167 IPR001932 -
Seca4g00288 169 ProSiteProfiles PPM-type phosphatase domain profile. 77 169 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00288 Seca-Chr4 4630484 4631808 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00288 20 169 PP2C-type Phosphatase Gene Family AT2G33700 60.667 4.95e-58 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00288 K14803 - gmx:100778015 285.034