Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00284 ATGCTTAAAAATTTGAAGGTTAGTTTAGTTGATGAGATGAATTTGTTTTGTGGTGTTTGGTGGATGATGATGGTGGTGGTGGTGGTGCTGCTGCCTTATTTGGGAGGGTTTGTGACGGCTGCAACTGCTACAGCAAATGTATCATCCTCAAGACCCTCTGTTGTGAATATCGGAGCTATCTTCACCTTCGATTCCGTGATTGGGAAAGTTGCTAAAATAGCCATGGAGGAAGCTGTGAAGGATATAAACGCCAATACTAACATTCTACATGGAACTAAACTCGTTCTTCATATGCAAACTTCCAATTGCAGTGGTTTTGATGGCATGGTTCAAGCTTTGAGGTTCATGGAGACTGATGTGGTTGCTATATTAGGTCCACAATCCTCTGTGGTTGCCCACATAATATCCCATGTTGCAAATGAGCTAAGGGTTCCTTTATTGTCATTTGCTGCAACAGACCCTACACTTTCATCACTTCAGTTCCCTTTTTTTGTGAGGACCACACTGAGTGATTTCTACCAAATGGCTGCTGTTGCTGAAATCATTGACCATTATGGTTGGAAGGAGGTGATTGCTATATATGTAGATGATGATTATGGAAGAAATGGTGTGTCTGCATTGGATGATGCATTAGCAGCTAGGCGCTGTAGAATCTCCTATAAGGCTGGGATTAAATCAGGACCTGAAGTTGACAAGGGTGAAATCACCAATTTGCTTGTGCAGGTGGCATTGATGCAATCTAGGGTCATTGTTCTCCATGTACATTCTAATTCTGGTTTTATGATCTTCAATGTGGCACATTATCTTGGGATGATACAAGAAGGCTATGTCTGGATAGCCACAGATTGGCTCTCTACTGTTCTAGATTCTTCTTCCCTCCCTTCAGAGACAATGGATGTTCTTCAAGGAGTGCTTGTTTTGCGCCAGCATACACCTGATTCAGATAAAAAAAGGGCATTTTTCTCTAGGTGGAACAAGTTAACTGGTGGCTCTTTGGGGTTACATTCTTATGGCCTTCATGCTTATGATACTGTTTGGCTGGTTGCACAGGCTGTTGATGCATTTTTCAGTCAGGGTGGGGTTGTTTCATGTACCAATTACACTAGTTTACATGATGATAAGGGAAGTGGTCTTAATCTTGATGCAATGAGCATTTTTGACAATGGAACTCTTCTGTTGAACAACATATTGAAGAGTGATTTTGTTGGATTAACAGGTCCAGTGAAATTTCAACCAGACAAATCTCTTGTTCGTCCTGCATATGACATCATTAATGTTGTTGGAACTGGCATGCGTAGGATTGGTTACTGGTCCAACTATTCTGGTCTTTCAATTGTGCCTCCTGAGACATTGTATGCTAAGCCACCTAATAGATCAAGTGCAAATCAGCAACTTAGCAGTGTGATATGGCCTGGAGAAACATTATCCAAGCCTCGTGGATGGGTATTCCCAAATAATGGAAAACAATTGAGAATTGGTGTGCCTATCCGAGTCAGTTACCGTGAATTTGTGTCTCCAGTGCAAGGAACAGATATGTTTAAAGGTTTCTGTGTTGATGTATTCATAGCAGCTGTAAACTTGTTACCATATGCTGTTCCATACCGTTTTGTGCCATTTGGAGATGGCCATCAAAATCCAAGCTACACAGAACTTGTCAGGTTAATCACCACTGGTTACTTTGATGGTGCCATTGGTGACATTGCCATTGTCACAAATCGGACTAGGGTGGTAGATTTTACACAGCCATATGCTGCATCTGGACTTGTTGTGGTGGCACCTTTTAAGAAGATCAATTCTGGTGGTTGGTCTTTCCTGCAGCCATTCACTCCTCTTATGTGGACTGTCACTGCTTGTTTCTTCTTTTTCATTGGGATAGTTGTATGGACTCTGGAACACAGGATAAATGATGAGTTCAGGGGTCCACCTAAACAACAAATTATAACCATTTTCTGGTTTAGCCTGTCAACTCTATTTTTTTCCCACAGAGAGAACACAATGAGTACTCTTGGTCGTGTTGTGATACTCATATGGTTGTTTGTGGTTTTGATCATCAATTCCAGCTACACTGCAAGTTTAACATCCATACTCACAGTGCAGCAGTTATCTTCTCCTATCAATGGGATAGACAGCCTAAAAGCTAGTAATGAACCTATAGGTTTCCAAGTGGGTTCATTCGCAGAAAGGTACTTGAGTGAAGATCTTGGAATATCCAAATCTAGACTTGTTCCCCTTGGATCTCCAGAAGCATATGCTAAGGCACTCCAGCTTGGTCCTAACAATGGAGGTGTTGCTGCTATTGTTGATGAACGACCTTATGTAGAAATCTTCTTATCAACACAGTGCACATTCAGGATTGTAGGTCAGGAGTTCACCAGAAGTGGCTGGGGTTTTGCATTCCCTCGGGACTCCCCTTTGGCTGTGGATTTGTCTACTGCCATTCTACAACTTTCTGAAACTGGAGATCTGCAGCGGATTCATGATAAGTGGATGACACGAAGCAGCTGTAGTTTAGATAATGCTGAAATTGACTCAGATCGTCTTCAGCTTAAGAGCTTCTGGGGTCTCTTTCTCATTTGTGGGATGGCTTGCTTTATTGCTCTTCTCATATATTTTTTACAGATTATGTGTCAGTTATGGCATTCTGCTCCTTCTGAATCTGCTTCAAATGTTAGCCCAATTCAAAGATTTCTTTCACTCATTGACGAGAAGGAAGATCCATCAAGGAGTGGGAGAAGAAAGAGGAATGGAGAAGAAAGATCACTTGAAGATCAAATGGGAAGGCAGCCAAAGAGGATACAAACAGAAACAACAGCTGAATTCAAATCAAACAATTAA 2835 0.4159 MLKNLKVSLVDEMNLFCGVWWMMMVVVVVLLPYLGGFVTAATATANVSSSRPSVVNIGAIFTFDSVIGKVAKIAMEEAVKDINANTNILHGTKLVLHMQTSNCSGFDGMVQALRFMETDVVAILGPQSSVVAHIISHVANELRVPLLSFAATDPTLSSLQFPFFVRTTLSDFYQMAAVAEIIDHYGWKEVIAIYVDDDYGRNGVSALDDALAARRCRISYKAGIKSGPEVDKGEITNLLVQVALMQSRVIVLHVHSNSGFMIFNVAHYLGMIQEGYVWIATDWLSTVLDSSSLPSETMDVLQGVLVLRQHTPDSDKKRAFFSRWNKLTGGSLGLHSYGLHAYDTVWLVAQAVDAFFSQGGVVSCTNYTSLHDDKGSGLNLDAMSIFDNGTLLLNNILKSDFVGLTGPVKFQPDKSLVRPAYDIINVVGTGMRRIGYWSNYSGLSIVPPETLYAKPPNRSSANQQLSSVIWPGETLSKPRGWVFPNNGKQLRIGVPIRVSYREFVSPVQGTDMFKGFCVDVFIAAVNLLPYAVPYRFVPFGDGHQNPSYTELVRLITTGYFDGAIGDIAIVTNRTRVVDFTQPYAASGLVVVAPFKKINSGGWSFLQPFTPLMWTVTACFFFFIGIVVWTLEHRINDEFRGPPKQQIITIFWFSLSTLFFSHRENTMSTLGRVVILIWLFVVLIINSSYTASLTSILTVQQLSSPINGIDSLKASNEPIGFQVGSFAERYLSEDLGISKSRLVPLGSPEAYAKALQLGPNNGGVAAIVDERPYVEIFLSTQCTFRIVGQEFTRSGWGFAFPRDSPLAVDLSTAILQLSETGDLQRIHDKWMTRSSCSLDNAEIDSDRLQLKSFWGLFLICGMACFIALLIYFLQIMCQLWHSAPSESASNVSPIQRFLSLIDEKEDPSRSGRRKRNGEERSLEDQMGRQPKRIQTETTAEFKSNN. 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00284 944 FunFam Glutamate receptor 170 322 - -
Seca4g00284 944 MobiDBLite consensus disorder prediction 901 929 - -
Seca4g00284 944 MobiDBLite consensus disorder prediction 901 944 - -
Seca4g00284 944 MobiDBLite consensus disorder prediction 930 944 - -
Seca4g00284 944 PRINTS Metabotropic glutamate GPCR signature 123 149 IPR000337 GO:0004930|GO:0007186|GO:0016020
Seca4g00284 944 PRINTS Metabotropic glutamate GPCR signature 174 190 IPR000337 GO:0004930|GO:0007186|GO:0016020
Seca4g00284 944 PRINTS Metabotropic glutamate GPCR signature 190 207 IPR000337 GO:0004930|GO:0007186|GO:0016020
Seca4g00284 944 PRINTS Metabotropic glutamate GPCR signature 155 174 IPR000337 GO:0004930|GO:0007186|GO:0016020
Seca4g00284 944 SMART GluR_14 491 832 IPR001320 GO:0015276|GO:0016020
Seca4g00284 944 Gene3D - 73 418 - -
Seca4g00284 944 SUPERFAMILY Periplasmic binding protein-like II 466 832 - -
Seca4g00284 944 Gene3D - 778 837 - -
Seca4g00284 944 FunFam Glutamate receptor 601 731 - -
Seca4g00284 944 PIRSF IGluLR_plant 21 944 IPR017103 -
Seca4g00284 944 Gene3D - 600 728 - -
Seca4g00284 944 Pfam Bacterial extracellular solute-binding proteins, family 3 512 831 IPR001638 -
Seca4g00284 944 Gene3D - 170 443 - -
Seca4g00284 944 Pfam Ligand-gated ion channel 832 863 IPR001320 GO:0015276|GO:0016020
Seca4g00284 944 CDD PBP1_GABAb_receptor_plant 56 447 IPR044440 -
Seca4g00284 944 Pfam Receptor family ligand binding region 73 428 IPR001828 -
Seca4g00284 944 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 55 888 IPR015683 -
Seca4g00284 944 FunFam Glutamate receptor 727 834 - -
Seca4g00284 944 CDD GluR_Plant 488 829 - -
Seca4g00284 944 Gene3D - 485 599 - -
Seca4g00284 944 FunFam Glutamate receptor 485 600 - -
Seca4g00284 944 SUPERFAMILY Periplasmic binding protein-like I 49 481 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00284 Seca-Chr4 4593466 4598379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00284 49 931 Ion Channels AT1G42540 65.740 0.0 1253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00284 K05387 - gmx:102661260 1528.46