Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00262 ATGTTAGCAATAGCAATGGAAGAGGTACTGTGTGAACTTAGTGATCATGAAAAGAGAAACGAGCAAGGTCTGCCACCGGGTTTTAGGTTTCATCCAACTGATGAAGAACTCATAACCTTTTATTTGGCTTCAAAGGTGTTTAATGCCACCTTCACTACTACTAATGTCAAGTTTGCCGAAGTTGACCTCAATAGGTGTGAGCCTTGGGAACTCCCAGATGTGGCAAAGATGGGGGAAAGAGAGTGGTACCTGTTCAGCTTGAGGGACAGAAAATACCCAACAGGACTAAGAACTAACAGAGCAACTGGAGCTGGGTACTGGAAGGCTACTGGGAAGGACAAGGAAGTTTACAGTGCCTCAAATGGTGCCCTACTTGGGATGAAGAAGACCCTTGTTTTCTACAAAGGCAGGGCCCCTCGTGGTGAAAAGACCAAATGGGTCATGCATGAGTACCGTTTGGATGGTCACTTTTCCCTTTCTCACCCTCACACTCACATTCACACCTGTAAGGAGGAATGGGTGATATGTAGGATATTTCATAAATCTGGGGAAAAGAGAAGTGCAATGCTCCAAGTACAAGGACAATTGGACACAAAAGGTTCTTCTTTACCACATGCAACTTCCTTTACATTGGAACTAGAATCTCAATCCCAAAGCACTTCCCAGCCCAACTTCCAAGGCCAAATTCTGAATATTCCCCACCAACACCAAAATGATCATCTTTTCCCATTCCAAACATCTTTCCCAATCACTGCTGCTACAGATTCACAACCAGGAGAAATCACCTACACCACCAGTAGAAACAACCATTCATCTTCTCAATCTCAACTACTATTCCTCAAGTCACAACAAAATTGCATGACCCTCAAGATCAAGGAGCAAGCCATTCCAAAACTAACCAAAACAGAGGCTCCATTCTGTGAATATCAATCACTAGATGGCACTAATAACTTGAGCAGCTGGATAGAGAAGCTGAACCAAAATCCAAGTAATTTCCAGAACCCCTTCCCTCTTGAGATGGATGGTGCAGCCCTGATGGTGTTCTCAGGGAACACAAATGCTGAATTTAGGGACATGAACAAACAGATGATGCAGCAGCTAGATGCTCCTATCCTATGGGAATAG 1125 0.44 MLAIAMEEVLCELSDHEKRNEQGLPPGFRFHPTDEELITFYLASKVFNATFTTTNVKFAEVDLNRCEPWELPDVAKMGEREWYLFSLRDRKYPTGLRTNRATGAGYWKATGKDKEVYSASNGALLGMKKTLVFYKGRAPRGEKTKWVMHEYRLDGHFSLSHPHTHIHTCKEEWVICRIFHKSGEKRSAMLQVQGQLDTKGSSLPHATSFTLELESQSQSTSQPNFQGQILNIPHQHQNDHLFPFQTSFPITAATDSQPGEITYTTSRNNHSSSQSQLLFLKSQQNCMTLKIKEQAIPKLTKTEAPFCEYQSLDGTNNLSSWIEKLNQNPSNFQNPFPLEMDGAALMVFSGNTNAEFRDMNKQMMQQLDAPILWE. 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00262 374 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 21 269 - -
Seca4g00262 374 SUPERFAMILY NAC domain 19 181 IPR036093 GO:0003677|GO:0006355
Seca4g00262 374 FunFam NAC domain-containing protein 100-like 33 185 - -
Seca4g00262 374 Gene3D NAC domain 33 185 IPR036093 GO:0003677|GO:0006355
Seca4g00262 374 ProSiteProfiles NAC domain profile. 24 181 IPR003441 GO:0003677|GO:0006355
Seca4g00262 374 Pfam No apical meristem (NAM) protein 25 153 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00262 Seca-Chr4 4266077 4268249 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00262 2 242 NAC Transcription Factor Family AT1G76420 59.426 6.30e-98 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca4g00262 NAM 8.4e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00262 - - gmx:100808967 421.394