Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00260 ATGTCAGGATCCGATAGCAGGGACCAGTTCACCATGGGCTTCAACAAACCCCAGCCACAGCAACAGCAACAGCTGCAACCGCACTTGCAGAACATGCGTTTAGACTACGCTGCTGACGGCGCTGGCGTTTTCAAGCCAGCGCCTATGTACAACCATTCAGCACCTGTAACCGCTCACATCAACGGCGGAGATTCTGCCGTGGGAGCTGTGCATCAGGGCCTGGGCCTGGGCCAGGGCAACATGGGTGCCTCTTCTGGTGAAACACCACTGAAAAGGAAGAGAGGGAGGCCCAGGAAATATGGGCCTGATGGAAGCATGGCGTTGTCGTTGACGACGACCACTCCTCCTCCTCCTGCTGCTCCTGCTCCTGCTCCTCCTCCAGCTGCTGCTCCTGCTGGGGTGCCTGTCAGCCAGCCCGGTGGGCCTGGGCAATTGACTCCGGTGACTCCATCGGCTCCTGGGTCAACTGGGACTGTGAAGAAGGGAAGAGGCAGGCCTCGCGGCTCTGTCAATAAGAATTCATCAAAGTCTTCTGGAAAATCAGGAAATGGATTTGTAGCAATTGTTATTACTGCGAACCCTGGAGAGGATTTGTCATCAAAGATTATGGCAGTTTCTAGGAATGGTGGAAGACATGTCTGCATCTTAGCAGCAAATGGAACCATATCTAATGTGACACTTCGTCAACCTGACTCATCTGGTGGAACTGTGACTTATGAGGGGAGATTTGAGATCCTATCTCTTGGTGGTTCTTTGCTTCTTTCTGCAAATAGTGCTTCGGACAGCAGATATGGTGGATTAAATGTGTCCTTGTCAGGACCAGATGGCCGTGTTTTGGGTGGTCTGGTTGCAGGTCTTTTGGTAGCTGCTGCCCCTGTTCAGATAGTTTTGGGGAGCTTTGGTTCAGCGGGTCGCAAGGGATCCAAATATGCAAAGCGGATGGAAAATCTATCTGCCCCACCTACGGGTTCCACAGCTGGCCAAAGCAGCTCCCCGTCACGGGGTACTTTCAGTGAATCGTCTGGTGGACCTGGGAGCCCACTTAACCAAAGTACAGGAGCCTGCAATAACAACAACACACCACAAGGCATTCCAGGCATGCCCTGGAAGTAA 1113 0.5292 MSGSDSRDQFTMGFNKPQPQQQQQLQPHLQNMRLDYAADGAGVFKPAPMYNHSAPVTAHINGGDSAVGAVHQGLGLGQGNMGASSGETPLKRKRGRPRKYGPDGSMALSLTTTTPPPPAAPAPAPPPAAAPAGVPVSQPGGPGQLTPVTPSAPGSTGTVKKGRGRPRGSVNKNSSKSSGKSGNGFVAIVITANPGEDLSSKIMAVSRNGGRHVCILAANGTISNVTLRQPDSSGGTVTYEGRFEILSLGGSLLLSANSASDSRYGGLNVSLSGPDGRVLGGLVAGLLVAAAPVQIVLGSFGSAGRKGSKYAKRMENLSAPPTGSTAGQSSSPSRGTFSESSGGPGSPLNQSTGACNNNNTPQGIPGMPWK. 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00260 370 MobiDBLite consensus disorder prediction 142 156 - -
Seca4g00260 370 MobiDBLite consensus disorder prediction 114 133 - -
Seca4g00260 370 MobiDBLite consensus disorder prediction 71 182 - -
Seca4g00260 370 Gene3D - 187 317 - -
Seca4g00260 370 Pfam Plants and Prokaryotes Conserved (PCC) domain 188 300 IPR005175 -
Seca4g00260 370 MobiDBLite consensus disorder prediction 315 370 - -
Seca4g00260 370 SMART AT_hook_2 91 103 IPR017956 GO:0003677
Seca4g00260 370 SMART AT_hook_2 160 172 IPR017956 GO:0003677
Seca4g00260 370 SUPERFAMILY AF0104/ALDC/Ptd012-like 187 303 - -
Seca4g00260 370 CDD DUF296 188 300 IPR005175 -
Seca4g00260 370 MobiDBLite consensus disorder prediction 168 182 - -
Seca4g00260 370 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 46 356 IPR039605 GO:0003680
Seca4g00260 370 MobiDBLite consensus disorder prediction 1 33 - -
Seca4g00260 370 MobiDBLite consensus disorder prediction 318 364 - -
Seca4g00260 370 MobiDBLite consensus disorder prediction 1 30 - -
Seca4g00260 370 ProSiteProfiles PPC domain profile profile. 182 321 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00260 Seca-Chr4 4250491 4255099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00260 31 370 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 46.439 3.76e-68 216