Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00256 ATGGCTTACCAAGCGATTCAGGGCCCGAGTTCGGGATCGAGTTCGAGTTCGGGGTTTCAACTATTGACCTCTCCTTTCGGCGACACCACGTACACCAAGGTCTTCGTTGGAGGATTGGCTTGGGAGACTCAGAGCGAAACCATGCGCCGTTACTTTGAGCAATTTGGTGAGATTCTCGAGGCCGTCGTGATCACTGATAAGAACACGGGGCGATCCAAAGGCTATGGTTTTGTGACTTTCCGGGATCCCGAGGCTGCTAGAAGAGCCTGTGCTGATCCGACTCCTGTCATTGATGGTAGAAGGGCTAATTGTAACTTGGCTTCACTTGGTCGACCTCGCCCCCCTATGTCCTATGGACGGGTAAGACCAGCCTCCCCTTTTGTTGGAAGTTTGCAACCAGCCCGTGGTGCTTATGTTGGAGGTTTTGGCTACCAGCAACCACTTTCCTATGGCTATCAACAAGGATTGGTTTATCCTCCTTATGGGTATACGACATATGGACCCGAATACATCTATCCACAGAGTCTGTACAACCCATATATGGGTCAACAGTACCTTCAAATATATGGAGTGCCTGGGGCAGTGAATACAACTATTTATCCATATGGACAATTAGGTCAATCTATTCCTAGTGGTCATGGTTATACAGCAATGCAGGGTTATACAGTACCAGGTCATCAAATTGTGCCCTATGGTGGATCCAATGTCAATGCCATAACAACTTCACCTATGCCTGCCATTCAAGCACCATATCCTAGCGGTAAATTGGAGTTCCGATTGACGGAATTGCTGCTCCAGTTCCAGGCCAACCACAATTTCTTGTTCCTGCTTCTCCTCAGTTTATGCAAGGTAGCGGTCCTGACCAAACAGCTGGGTGAGGGGACGAATAAGATATCCTTAGTTTGCAGCAGGACTAAGAGCAGTGGAACTGCTACTTGA 939 0.4846 MAYQAIQGPSSGSSSSSGFQLLTSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPTPVIDGRRANCNLASLGRPRPPMSYGRVRPASPFVGSLQPARGAYVGGFGYQQPLSYGYQQGLVYPPYGYTTYGPEYIYPQSLYNPYMGQQYLQIYGVPGAVNTTIYPYGQLGQSIPSGHGYTAMQGYTVPGHQIVPYGGSNVNAITTSPMPAIQAPYPSGKLEFRLTELLLQFQANHNFLFLLLLSLCKVAVLTKQLGEGTNKISLVCSRTKSSGTAT. 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00256 312 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 90 IPR000504 GO:0003723
Seca4g00256 312 PANTHER BOULE-RELATED 10 244 - -
Seca4g00256 312 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 26 113 - -
Seca4g00256 312 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 109 IPR000504 GO:0003723
Seca4g00256 312 SMART rrm1_1 33 105 IPR000504 GO:0003723
Seca4g00256 312 SUPERFAMILY RNA-binding domain, RBD 31 143 IPR035979 GO:0003676
Seca4g00256 312 CDD RRM_RBM24_RBM38_like 32 107 - -
Seca4g00256 312 Gene3D - 4 122 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00256 Seca-Chr4 4219304 4224551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00256 21 108 C2H2 Transcription Factor Family AT2G19380 43.182 6.07e-17 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00256 - - gmx:100779244 479.559