Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00254 ATGGCTTCTCACAATAACAATGACGGAAGCCAAAACCAAAGTCAATTAGGTCGGTTTGTACCACACCTGTTTATGACACCAGACCTACACCTTCAAACACCTAATACCCTAACCGCTCAACCAACTCAAGACGACTCCGACGGAGATGATGCTGGTGGAACCGAAACCGCCGGAGGAGCAGGAGCATCCTCCATAGGGCGGCGCCCTAGAGGCCGTCCTCCCGGCTCCAAGAACAAGCCCAAGGCACCTATCATAGTAACAAGGGACAGTCCCAACGCGCTTCGCTCGCACGTGCTGGAGATCACGGCTGGAACTGACGTGGTGGAGAGCCTCTCCGATTACGCTCGTCGCCGAGGGAGAGGAGTCTGTGTGCTTAGCGGTAACGGAACGGTCTCGCACGTGACGCTTCGTCAGCCTGCGGGTGGGAGCGTTGTAACTCTTCATGGACGGTTCGAGATTCTTTCCATCTCCGGGACGGTTCTCCCGCCGCCGGCTCCGCCTGGTGCGGATGGATTGACGGTTTATTTGTCTGGAGGACAGGGACAGGTGGTTGGGGGAAGCGTGGTGGCGCCTTTGATGGCTTCAGGTCCGGTGGTGTTGATGGCTGCTTCGTTTGCTAACGCTATGTTTGAAAGGTTACCTTTGGCTTTGGAGGAACAACCCGCAACGACATCACAGTCTTCTGGTGTCACTGGACAAATGGTAGAAGGTGGTGGTGGTGGCAGTGGAAGTGGAAGCGTTGCCTCTTTCATGAATACGGCGGCGGTGGCGGCAGGAAGGAACATGAGCAGGATCAACTATCCCTTTTCCTCCTCCTCATCTGTGCCTGCAGTGCCAGGTGATCTATTTGGATGGGGTGCAACTGCAGGAGGACAAGCACCAAAACCTCCTCCTTTTTAG 900 0.5556 MASHNNNDGSQNQSQLGRFVPHLFMTPDLHLQTPNTLTAQPTQDDSDGDDAGGTETAGGAGASSIGRRPRGRPPGSKNKPKAPIIVTRDSPNALRSHVLEITAGTDVVESLSDYARRRGRGVCVLSGNGTVSHVTLRQPAGGSVVTLHGRFEILSISGTVLPPPAPPGADGLTVYLSGGQGQVVGGSVVAPLMASGPVVLMAASFANAMFERLPLALEEQPATTSQSSGVTGQMVEGGGGGSGSGSVASFMNTAAVAAGRNMSRINYPFSSSSSVPAVPGDLFGWGATAGGQAPKPPPF. 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00254 299 CDD DUF296 95 161 IPR005175 -
Seca4g00254 299 MobiDBLite consensus disorder prediction 33 84 - -
Seca4g00254 299 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 38 242 IPR014476 GO:0003680
Seca4g00254 299 MobiDBLite consensus disorder prediction 33 47 - -
Seca4g00254 299 Gene3D - 94 220 - -
Seca4g00254 299 Pfam Plants and Prokaryotes Conserved (PCC) domain 95 206 IPR005175 -
Seca4g00254 299 ProSiteProfiles PPC domain profile profile. 91 229 IPR005175 -
Seca4g00254 299 FunFam AT-hook motif nuclear-localized protein 94 221 - -
Seca4g00254 299 SUPERFAMILY AF0104/ALDC/Ptd012-like 91 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00254 Seca-Chr4 4195739 4197441 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00254 42 215 AT-hook Motif Nuclear Localized (AHL) Family AT1G76500 66.129 3.51e-70 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00254 - - aip:107609871 260.766