Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00253 ATGCAAGGTTGGCATGCTCAGCGCCTTCTTGGATATGGTGAGGTTGCTGAGCCAGTTATTAAGGACAAGAACTTCAGTTCCACACCAAAGCGTGAAAAGAACCTCAAAAGCATTGGCATGATTAATAAGCAGAGGACACCATCTGGACTGGATCAAGATAAAGCTGCCAATATTGAAGGAGATAGACAATTGGTCACAGCAGTAGTTGACGTTGGACCCCCAGCTGACTGGGTGAAGATCAATGTGCGGGAAACTAAGGATTGTTTTGAAGTGTATGCACTAGTTCCTGGGCTGCTTCGTGAGGAGGTGCGAGTCCAGTCAGATCCTGTTGGACGTCTTGTTATAACTGGTCTGCCGGAACAGGTTGACAATCCATGGGGAATTACACCCTTCAAAAAGGTTGTGAACTTACCTGCGAGAATTGATCCTCTTCAGACATCTGCTGTTGTTAGTTTGCATGGTCGACTATTTGTACGCGTTCCTTTCGAGCAGGGAGCTGTATGA 504 0.4663 MQGWHAQRLLGYGEVAEPVIKDKNFSSTPKREKNLKSIGMINKQRTPSGLDQDKAANIEGDRQLVTAVVDVGPPADWVKINVRETKDCFEVYALVPGLLREEVRVQSDPVGRLVITGLPEQVDNPWGITPFKKVVNLPARIDPLQTSAVVSLHGRLFVRVPFEQGAV. 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00253 167 CDD ACD_sHsps_p23-like 82 161 - -
Seca4g00253 167 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 1 164 IPR045147 GO:0006357
Seca4g00253 167 FunFam AT-rich interactive domain-containing protein 3 58 166 - -
Seca4g00253 167 Gene3D - 60 166 IPR008978 -
Seca4g00253 167 SUPERFAMILY HSP20-like chaperones 75 162 IPR008978 -
Seca4g00253 167 Pfam Hsp20/alpha crystallin family 82 163 IPR002068 -
Seca4g00253 167 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 66 167 IPR002068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00253 Seca-Chr4 4178466 4184182 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00253 1 164 ARID Transcription Factor Family AT1G76510 74.390 7.14e-84 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00253 - - vra:106762506 320.087