Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00232 ATGGCTTCAAATTCTGATTCGGATTCCTCAACACCACCTCCTCCACCCGATTCATCTTCATCAGAATCCCCGCCACCACCCGATTCATCGCCGCCTCCACCACCCAACGATAATTCATCTCCGCCACCACCATCCTCTCCTCCTCCTCCATCATCCCCTCCTCCGCCATCCCCTCCACCGCCATCAGACGATGATAACAAATCTCCACCTCCGCCATCTGGCTCTTCCCCATCTCCACCACCACCTTCTGACAGGGACAAGCACTCGCCTCCGCCTCCACCTCCGCCTCCGCCCCCACCCCATTCGAGCCATGAACAGTTTTCTCCGCCTCCGCCACCACATCATCATCGATTGTCTCCACCAGGGTCATCAGAATCCGATACGCAAGAGGATAGTGGGGGTGGGAACCAATTGAGCGTTGCATCTATAATAGGAGTCGCAGCTGGAGCTGGGTTATTGCTCCTTGTCGTTGTCCTACTCGTCATTGCCTGTACTAGAAGGAAAAGAAGATCGGAAGCTCCCATGCATTACTTCAATCAACAAGGAGATAATGACTATTATAAACGTCCAACTGGAGCTCCAAATCAGTATGGGTACAATAATGGTGAGCATGTTCTTAATATTCCTCCACCGCCAGGTGCAGGTTGGGGACCTCCTCCACCAGCACCACCCCAACGGGTTAGTAGTGACTTGAGCACCTCTAGTTTCTCTGGGTCCCATGGTCCTGTATTGCCACCCCCACACCCTACTGTGGCCCTTGGATTTAACCAAAGCTCCTTCACATTTGATGAGTTATCAGCTGCCACTGGTGGGTTTTCCCAACGTAACCTACTAGGTCAAGGTGGGTTCGGATATGTACACAAAGGTGTTCTACCTAATGGCAAGGAAATAGCAGTGAAGAGCCTTAAATCTACCGGGGGCCAAGGAGATAGAGAATTCCAAGCAGAGGTTGATATTATTAGCCGTGTCCACCATCGCTATCTTGTGTCGCTTGTTGGGTATTCCCTTACGGAAAGTAGAAAGTTGTTGGTATATGAGTTTGTTCCTAACAAGACCCTTGATTACCACCTTCATGGAAAAGGTAGACCTGTCATGGATTGGGGCACTAGGCTCAAAATTGCAATTGGATCAGCCAAAGGACTTGCTTACTTACATGAGGATTGTCACCCTCGTATCATTCATCGAGACATAAAGGGTGCAAACATTCTACTTGAAAACAACTTTGAAGCCAAGGTGTCAGATTTTGGATTGGCAAAGTTTAGCCAAGACACGAACACTCATGTTTCTACTCGTGTGATGGGAACATTTGGGTATTTGGCTCCTGAGTATGCATCAAGTGGTAAGCTAACAGAGAAATCTGATGTCTTTTCATACGGTATTATGCTTTTGGAGCTCATAACAGGTCGACGCCCAGTGGACAACACTGGTGATTATGAAGAGGATAGCTTGGTTGATTGGGCTAAACCACTTTGTATAAAAGCTATGGAAAATGGTATATTTGATGGATTAGTGGATCCACGTTTAGAGGACAATTATGACAAACAGGAGATGACACGTATGGTGGCTTGTGCTGCTGCTAGCGTTAGGCACTCTGCAAGAAGGCGCCCAAGAATGAGCCAGATTGTACGAGTACTAGAGGGAGATGCCTCATTAGACGTCCTTAATCATGATGGAGTTAAGCCTGGGCAGAGTGCAATGTTTAGCAGCGCAAGTGGCGAATATGATGCTGGGGCATATAGTGCTGACATGAAAAAGTTCAGGAAACTAGCATTTGATAGCGGCAATGCAAGCAGTGAGTTTGGTGAAACAAGTGAGTATGGCCTCAATCCTTCCATCTCAAGCAGTGAACAATCATCTACTGAATATGGCAGGAGGACAGGAACTCGGATGCACACTCCTTGA 1902 0.48 MASNSDSDSSTPPPPPDSSSSESPPPPDSSPPPPPNDNSSPPPPSSPPPPSSPPPPSPPPPSDDDNKSPPPPSGSSPSPPPPSDRDKHSPPPPPPPPPPPHSSHEQFSPPPPPHHHRLSPPGSSESDTQEDSGGGNQLSVASIIGVAAGAGLLLLVVVLLVIACTRRKRRSEAPMHYFNQQGDNDYYKRPTGAPNQYGYNNGEHVLNIPPPPGAGWGPPPPAPPQRVSSDLSTSSFSGSHGPVLPPPHPTVALGFNQSSFTFDELSAATGGFSQRNLLGQGGFGYVHKGVLPNGKEIAVKSLKSTGGQGDREFQAEVDIISRVHHRYLVSLVGYSLTESRKLLVYEFVPNKTLDYHLHGKGRPVMDWGTRLKIAIGSAKGLAYLHEDCHPRIIHRDIKGANILLENNFEAKVSDFGLAKFSQDTNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSYGIMLLELITGRRPVDNTGDYEEDSLVDWAKPLCIKAMENGIFDGLVDPRLEDNYDKQEMTRMVACAAASVRHSARRRPRMSQIVRVLEGDASLDVLNHDGVKPGQSAMFSSASGEYDAGAYSADMKKFRKLAFDSGNASSEFGETSEYGLNPSISSSEQSSTEYGRRTGTRMHTP. 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00232 633 MobiDBLite consensus disorder prediction 595 633 - -
Seca4g00232 633 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 248 347 - -
Seca4g00232 633 MobiDBLite consensus disorder prediction 175 241 - -
Seca4g00232 633 MobiDBLite consensus disorder prediction 211 226 - -
Seca4g00232 633 ProSitePatterns Protein kinases ATP-binding region signature. 278 300 IPR017441 GO:0005524
Seca4g00232 633 MobiDBLite consensus disorder prediction 596 633 - -
Seca4g00232 633 Gene3D Phosphorylase Kinase; domain 1 249 347 - -
Seca4g00232 633 ProSiteProfiles Protein kinase domain profile. 272 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g00232 633 SUPERFAMILY Protein kinase-like (PK-like) 252 545 IPR011009 -
Seca4g00232 633 PRINTS Proline rich extensin signature 49 74 - -
Seca4g00232 633 PRINTS Proline rich extensin signature 31 48 - -
Seca4g00232 633 PRINTS Proline rich extensin signature 9 25 - -
Seca4g00232 633 MobiDBLite consensus disorder prediction 9 118 - -
Seca4g00232 633 ProSitePatterns Serine/Threonine protein kinases active-site signature. 392 404 IPR008271 GO:0004672|GO:0006468
Seca4g00232 633 SMART serkin_6 272 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g00232 633 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 149 595 IPR047117 -
Seca4g00232 633 Gene3D Transferase(Phosphotransferase) domain 1 348 556 - -
Seca4g00232 633 FunFam Proline-rich receptor-like protein kinase PERK1 348 556 - -
Seca4g00232 633 Pfam Protein tyrosine and serine/threonine kinase 275 483 IPR001245 GO:0004672|GO:0006468
Seca4g00232 633 MobiDBLite consensus disorder prediction 1 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00232 Seca-Chr4 3652550 3656438 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00232 131 624 Trihelix Transcription Factor Family AT1G70460 50.101 5.77e-155 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Seca4g00232 Pkinase 2.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00232 - - gmx:100806299 772.696