Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00228 ATGCAGATGGATATGTTTGATGATAAATCAACTGTTAATCTGCAAAAAGATGAAGTTCGGAATAATGATGTTTCATGTGGGGATAGTTCTAGTTGTGAAGACAGTGATGATACCTCTGGTGGAGAAGATAATGATGGTAGTTGTTGTGGAGAAGATAATGATGATAGTTGTAGTGAAGAGGAATTTCATATTAGGAATGAGAAAGTGGGTGATGAGAAAATGAGTGAGGAAAAAGTGAAAGTAGGTTTTGTTGTTAGGAAAGATGATGTGAAGAAGGATGTAAGGGGACAGATTGTAATGCGCCAGATTGTTTGCAATAGAGAAGGATTAAGGAATAAAAAATATTTCATGAGGGTAGATAGGAAAAGAGATCATAAACCTATGACCCGCACAAATTGTTTAGCTAAGTTGCGGATCCACTACCATCAAAGGACATCTAAATGGAGAGTGGTTTCCTTTGAGGAGTGTCATAACCATGAACTTACTCCAGCCAAATTTGTGCATTTGTTTCCTGCATACCGTAAAATGACAGAAGCAGACAAAGCTCAAGTGGACAGTTTGCATTCTTTTGGGGTAAGAACATGTCATATAATGGGGTATCTTGTTTCTCAAAAGGGTGGATATGGTGGTGTTGGGTTTACTAGAAAGGATTTATATAACTATTTGGATAGCAAAACTCGTATGAAGATTAAAGACGGGGATGCACGTGCTGCATTGAGTTATCTACAAGGCAAAGCTGACAATGGAGGGACATTATTTGCTAGATATCAAAATACTAGAGATGGTAAGCTGAAGTATCTATTTTGGGCAGATGCAGTTAGCAGATATGATTATAAGTGTTTTGGTGATGTTGTTGCCTTTGACACCACATATAAAAAGAATAGGTACAACTATCCTCTGGTTATCTTTTCTGGTTGCAATCATCATTCGCAAACCATAATTTTTGGTTGTGCTCTTGTCTTAGATGAAACAACTGAGACGTACAAGTGGGTATTGGAATCTTTTCTGGCTGCAATGTCAAATAAACATCCAAAAGCAGTGGTCACAGATGGAGATGGTGCCATGAGGGAGGCCATAAGGCATGTTTTTCCTGAGGCTTCACATCGTTTGTGTGCATGGCACTTGCATAACAATGCATGTGAAAATGTGAAGCACCCTGCATTTTTGGAGGACTTCAAGACGGCTATGTATACAAATTTTTCACCTGAACAATTTGAAGAATATTGGGAGAATATGGTTGAGAAGCATGGTGTTGTGGGAAACAGGTGGGTTTCAAAGACATATGAAAACAAGTCTCTGTGGGCGACTGCTTATTTGCGTGATAAGTTTTTTGGTAGGATTAGGACAACATCCCAATGTGAAGCTATTAATTCAGTCATTAAGGTGTATGTTAAGAAAAAAAGTAGCATGGTTGAGTTTATGCATAATTTTCATAGAGCTTTGAGAGAGTACAGAAATAATGAGTTCGTTGCTGATTTTAAAGGGCTTTATTCAGAACCTGTGATGACTACACCACTTGTGAAGATTGAGAAAGAGGCTTCCAAAGTCTATACAGTGGAGATTTTTAGAGAAGTGAACCAATAG 1584 0.3807 MQMDMFDDKSTVNLQKDEVRNNDVSCGDSSSCEDSDDTSGGEDNDGSCCGEDNDDSCSEEEFHIRNEKVGDEKMSEEKVKVGFVVRKDDVKKDVRGQIVMRQIVCNREGLRNKKYFMRVDRKRDHKPMTRTNCLAKLRIHYHQRTSKWRVVSFEECHNHELTPAKFVHLFPAYRKMTEADKAQVDSLHSFGVRTCHIMGYLVSQKGGYGGVGFTRKDLYNYLDSKTRMKIKDGDARAALSYLQGKADNGGTLFARYQNTRDGKLKYLFWADAVSRYDYKCFGDVVAFDTTYKKNRYNYPLVIFSGCNHHSQTIIFGCALVLDETTETYKWVLESFLAAMSNKHPKAVVTDGDGAMREAIRHVFPEASHRLCAWHLHNNACENVKHPAFLEDFKTAMYTNFSPEQFEEYWENMVEKHGVVGNRWVSKTYENKSLWATAYLRDKFFGRIRTTSQCEAINSVIKVYVKKKSSMVEFMHNFHRALREYRNNEFVADFKGLYSEPVMTTPLVKIEKEASKVYTVEIFREVNQ. 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00228 527 MobiDBLite consensus disorder prediction 17 34 - -
Seca4g00228 527 Pfam FAR1 DNA-binding domain 80 162 IPR004330 -
Seca4g00228 527 Pfam MULE transposase domain 284 378 IPR018289 -
Seca4g00228 527 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 54 526 IPR031052 GO:0006355
Seca4g00228 527 MobiDBLite consensus disorder prediction 1 57 - -
Seca4g00228 527 MobiDBLite consensus disorder prediction 35 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00228 Seca-Chr4 3619213 3620907 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g00228 MULE 3e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00228 - - ccaj:109792835 685.256