Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00221 ATGGCAGCGTCCGGCGTCTCCTCCGGCGGTGCTCTGCCGGAGCTAACTAAACGAACTCCCATTCTAGGCCTCAAACTCTACGTCTTAATCCTCATTTTCCTCATGATCGTGCTGGCAATCGCGCTCATCATCTTCCTCTGCATTCGCCGGAGTCGAAGCTCCAAGAAGCGGAAAATGCGAGTGAAGCACAGCTCCGGCACAATCCCACTCGTGTCCAAGGAGATCGTGGAGGTGCTCAAAATCGAACACGTAGACGATGATGATCCGAAGAAACAGGAGGAATTGGATATTGAAGAGAGTGTGTCGGTGGAGTCTCCATCACCGAACATAGGGTGGGGACGCTGGTATAGCATGAAGGAACTGGAGATTGCAACAGATGGATTTGCAGAAGGGAACGTGATCGGAGAAGGAGGGTATGGGATTGTGTACAGAGGAATTCTGCAAGACGGTTCTGTCGTAGCAGTGAAGAATCTTCTCAACAACAAGGGTCAAGCAGAGAAAGAGTTTAAGGTGGAGGTTGAAGCCATTGGAAAAGTGAGGCATAAGAATTTGGTGGGGTTAGTTGGATATTGTGCAGAAGGTGCTCGAAGGATGCTTGTTTATGAATATGTTGACAATGGAAATTTGGAGCAGTGGTTGCATGGTGATGTAGGGCCTGTTAGCCCCTTGACATGGGATATACGAATGAAGATTGCCGTTGGGACTGCAAAAGGGCTAGCCTACTTGCACGAAGGCTTAGAACCCAAAGTTGTCCACCGAGATGTAAAATCCAGTAACATTCTTTTGGACAAAAAGTGGAATGCCAAAGTATCAGACTTTGGACTGGCCAAGCTCTTAGGATCTGGGAAAAGCTATGTGACAACGCGTGTAATGGGGACATTTGGATATGTTTCACCTGAGTATGCAAGCACGGGTATGCTTAATGAGGGCAGTGATGTCTATAGTTTTGGGATTCTACTTATGGAGCTAATTACAGGCAGAAGTCCCATTGATTATTCGAGACCACCAGGAGAGATGAACTTGGTTGATTGGTTTAAGGGAATGGTAGCAAGTCGCCGTGGTGATGAGCTAGTTGATCCTTTAATTGAGATTCAGCCCTCTCCAAGATCTTTGAAGCGAGCTTTACTGGTTTGTCTGCGCTGTATAGATTTGGATGCCAGTAAGCGACCAAAGATGGGTCAGATTGTCCATATGCTTGAAGCGGATGATTTTCCCTTTCGTTCTGTAAGACATTAA 1236 0.4693 MAASGVSSGGALPELTKRTPILGLKLYVLILIFLMIVLAIALIIFLCIRRSRSSKKRKMRVKHSSGTIPLVSKEIVEVLKIEHVDDDDPKKQEELDIEESVSVESPSPNIGWGRWYSMKELEIATDGFAEGNVIGEGGYGIVYRGILQDGSVVAVKNLLNNKGQAEKEFKVEVEAIGKVRHKNLVGLVGYCAEGARRMLVYEYVDNGNLEQWLHGDVGPVSPLTWDIRMKIAVGTAKGLAYLHEGLEPKVVHRDVKSSNILLDKKWNAKVSDFGLAKLLGSGKSYVTTRVMGTFGYVSPEYASTGMLNEGSDVYSFGILLMELITGRSPIDYSRPPGEMNLVDWFKGMVASRRGDELVDPLIEIQPSPRSLKRALLVCLRCIDLDASKRPKMGQIVHMLEADDFPFRSVRH. 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00221 411 FunFam Probable serine/threonine-protein kinase At1g01540 108 203 - -
Seca4g00221 411 Gene3D Phosphorylase Kinase; domain 1 90 203 - -
Seca4g00221 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672|GO:0006468
Seca4g00221 411 PANTHER OS01G0323000 PROTEIN 14 407 - -
Seca4g00221 411 CDD STKc_IRAK 134 400 - -
Seca4g00221 411 ProSitePatterns Protein kinases ATP-binding region signature. 134 156 IPR017441 GO:0005524
Seca4g00221 411 SUPERFAMILY Protein kinase-like (PK-like) 102 400 IPR011009 -
Seca4g00221 411 FunFam Putative receptor-like serine/threonine-protein kinase 204 411 - -
Seca4g00221 411 ProSiteProfiles Protein kinase domain profile. 128 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g00221 411 SMART serkin_6 128 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g00221 411 Gene3D Transferase(Phosphotransferase) domain 1 204 405 - -
Seca4g00221 411 Pfam Protein kinase domain 130 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00221 Seca-Chr4 3531281 3535459 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00221 29 400 Receptor kinase-like Gene Family AT4G02010 43.421 3.63e-95 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Seca4g00221 Pkinase 2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00221 - - gmx:100779420 681.789