Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00220 ATGTTGGATCGGCGAGGCATAGTGTGGTTTGGGTTTTTGTTCTTTCTGCTGTTTGAGGTGACATTGGAGCAGATTGAGCCACTGAGTTCCCAAACTGAGAGAGCAGCACTCCTTCAACTGAGAGCTTCTTTGGGGTTAAGGAGCAAGGAATGGCCAAGAAAGCCAGACCCTTGCTTAATCTGGATTGGTATCACCTGCCAGAATGGTCGTGTTGTTGGGATCAATATTTCTGGCTTTAGAAGAACCCGTCTTGGGCGGAGAAACCCACAATTTGCTGTGGATGCCTTGGCCAATTTCACTCTCTTGCAGTCCTTCAATGCTTCCAATTTCCCCCTTCCTGGTCCTATTCCTAATTGGTTTGGTCTCAGCCTCCCTTCACTTCGTGTGCTTGATCTTCGTTCTTGCTCCATTGTTAATGCTATTCCTTCCACACTTGGGAATTTAACCAACCTAACAGCTTTGTATCTTTCTGATAACAATCTTACTGGGACAGTTCCTGATACACTGGGTCAACTCTCAGCACTTTCAGTTCTTGATCTCTCCAGGAATTCTCTTGTTGGCTCCTTACCAACATCCTTTGCCTTTCTTGCAAATCTTTCAAGGTTACGATATTTGAATCTTTCCAGCAATGGCCTAACTTCTTTGCCTGCCCAACTGGGGGGTCTTACTAGCTTGGTAGACCTTGATCTTAGTGACAATTCTTTTTCTGGTGGAGTCCTTCCAGATTTGAAAAGGTTGAGGAACTTGCGGAGAATGATACTTGCAAACAGCAGGCTCAATGGACCTTTGCCGGCTGACTTGTTTACTGCTTCATTACGGTTGCAGATCATAGTGCTGAGTCAAAACAATTTTACTGGTTCTTTGCCTGTTGGGTTGTGGTCTCTGCCAAGATTGACCTTGCTTGATGTGTCTGCCAATAACTTCAGTGGTTTGCTTCCTAATTCTAGTTCTGCTGCTAATGCTACTATTGCGGTGCTCAATGTTTCTCATAATAAGTTTTATGGAGGCCTCACACCTGTGCTCCAAAGGTTTAGTTTTGTCGATCTCTCCAACAATTATTTTGAGGGAAAGGTTCTGGATTTCATACGTAATGCATCTCTAGATAGCAACTGTCTCCAAAACGTGACAAATCAGAGGACAACAGTGGAATGTGCATCATTTTATGCAGAGAGGGGCCTCAGTTTTGATAATTTTGGACGCCCTAATTCGACAAACCCTCCCACTGGCTCTAGGAAGAGTAATAAAACTAAGATTATATTGGCAGCAGTCTTGGGTGGACTGGGTTTATTTGCACTTTTGGTGTTCCTATTGGTATTGTTGCTTCTGTGCACTCGTAAGAGGGGTAATTCAAATCAAAGGGGAAATGGTGTGGGCCCTGCTCCTGCTGGAGGCAGTCCTCCACATCCTGGTGCATCAATAAACTTTTCAAATATAGGAGACTCATTTACATATCATCAGTTGCTCCAGGCAACAGGAGATTTCAATGATACAAATCTTCTCAAACATGGCCACACTGGGGATTTATTCAATGGTGTTTTGGAAAATGGGATTCCTGTTGTCATCAAAAGGATCGACATGCATTCAACTAAAAAGGATGCTTACCTAGTGGAATTGGATTTTTTCAGTAAGGTTTCTCATCAAAGATTTGTTCCCTTGTTAGGTCATTGCATAAAAAATGAGAACGAGAAGTTTCTGGTATATAAACATATGCCAAATGGGGACTTGTCTAATTCCTTATTCTACAAAAACGCTACATCTGAAGATGGCACTTTGCAGTCATTGGACTGGATAACTAGGTTGAAAATTGCTACTGGAGCAGCAGAGGCCCTGACGTATCTGCATCAAGAATGTATTCCACCCATTGTTCACAGAGATATTCAAGCAAGCAGTATACTTCTGGATGATAAATATGAAGTTCGGTTAGGGAGTCTAAGTGAAGCATGTGCCCAAGAAGGTGATACTCATCAAAGTAAAATCACCCGGTTTCTGCGATTGCCTCAGTCCTCTGAACAAGGCACATCTGGTTCATCAATAACAATTTGTGCCTATGACGTGTATTGCTTTGGGAAAGTGTTACTTGAGCTGGTGACTGGTAAGCTGGGCATAAGTGCATCAAGTGATGGTGAAGTGAAGGAATGGCTTGATCAGATTCTACCTTGCATTAGTATGTATGACAAGGAGCTTGTGACAAAAATTGTGGATCCATCTCTGGTTGTTGATGAGGATTTCTTAGAGGAAGTGTGGGCTATAGCCATTGTTGCCAGATCATGCCTAAATCCCAAACCTTCAAGAAGACCCTCAATGAGACATGTTCTCAAAGCATTGGAAAACCCTTTAAAAGTTGTAAGGGAAGAAAATTTCAGTTCTGCAAGGCTTAAAGCAACATCTTCTAGAGGCTCTTGGAATGCTACTTTATTTGGTAGTTGGCGTCAGAGTTCATCTGATGTAACAGTAATTCCAGCAGCCTCTGGTACAAAATTAGAAGGAACAAGTAGTTTAAAGCTTTCAGGAACTACAGGGTCACAGTCACAGGGTAGCTTCCACAATGGTGGGGCTGATATTTCATCATCTCGGAGGCGTCATTCAAATGATATATTCCCAGAGCCATCTGGTTTACATGATGTAGTAGGAATAGAGGCTTGA 2643 0.4272 MLDRRGIVWFGFLFFLLFEVTLEQIEPLSSQTERAALLQLRASLGLRSKEWPRKPDPCLIWIGITCQNGRVVGINISGFRRTRLGRRNPQFAVDALANFTLLQSFNASNFPLPGPIPNWFGLSLPSLRVLDLRSCSIVNAIPSTLGNLTNLTALYLSDNNLTGTVPDTLGQLSALSVLDLSRNSLVGSLPTSFAFLANLSRLRYLNLSSNGLTSLPAQLGGLTSLVDLDLSDNSFSGGVLPDLKRLRNLRRMILANSRLNGPLPADLFTASLRLQIIVLSQNNFTGSLPVGLWSLPRLTLLDVSANNFSGLLPNSSSAANATIAVLNVSHNKFYGGLTPVLQRFSFVDLSNNYFEGKVLDFIRNASLDSNCLQNVTNQRTTVECASFYAERGLSFDNFGRPNSTNPPTGSRKSNKTKIILAAVLGGLGLFALLVFLLVLLLLCTRKRGNSNQRGNGVGPAPAGGSPPHPGASINFSNIGDSFTYHQLLQATGDFNDTNLLKHGHTGDLFNGVLENGIPVVIKRIDMHSTKKDAYLVELDFFSKVSHQRFVPLLGHCIKNENEKFLVYKHMPNGDLSNSLFYKNATSEDGTLQSLDWITRLKIATGAAEALTYLHQECIPPIVHRDIQASSILLDDKYEVRLGSLSEACAQEGDTHQSKITRFLRLPQSSEQGTSGSSITICAYDVYCFGKVLLELVTGKLGISASSDGEVKEWLDQILPCISMYDKELVTKIVDPSLVVDEDFLEEVWAIAIVARSCLNPKPSRRPSMRHVLKALENPLKVVREENFSSARLKATSSRGSWNATLFGSWRQSSSDVTVIPAASGTKLEGTSSLKLSGTTGSQSQGSFHNGGADISSSRRRHSNDIFPEPSGLHDVVGIEA. 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00220 880 FunFam Putative LRR receptor-like serine/threonine-protein kinase 570 795 - -
Seca4g00220 880 SUPERFAMILY L domain-like 58 395 - -
Seca4g00220 880 Gene3D Ribonuclease Inhibitor 197 396 IPR032675 -
Seca4g00220 880 Gene3D Ribonuclease Inhibitor 28 196 IPR032675 -
Seca4g00220 880 MobiDBLite consensus disorder prediction 451 470 - -
Seca4g00220 880 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 298 776 - -
Seca4g00220 880 Gene3D Transferase(Phosphotransferase) domain 1 570 796 - -
Seca4g00220 880 ProSiteProfiles Protein kinase domain profile. 494 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g00220 880 FunFam Predicted protein 464 569 - -
Seca4g00220 880 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g16250 270 400 - -
Seca4g00220 880 SMART LRR_typ_2 295 318 IPR003591 -
Seca4g00220 880 SMART LRR_typ_2 246 270 IPR003591 -
Seca4g00220 880 SMART LRR_typ_2 172 195 IPR003591 -
Seca4g00220 880 SMART LRR_typ_2 148 171 IPR003591 -
Seca4g00220 880 SMART LRR_typ_2 199 222 IPR003591 -
Seca4g00220 880 SMART LRR_typ_2 124 147 IPR003591 -
Seca4g00220 880 Pfam Leucine Rich repeats (2 copies) 201 236 IPR025875 -
Seca4g00220 880 Gene3D Phosphorylase Kinase; domain 1 471 569 - -
Seca4g00220 880 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g16250 30 189 - -
Seca4g00220 880 Pfam Protein tyrosine and serine/threonine kinase 499 774 IPR001245 GO:0004672|GO:0006468
Seca4g00220 880 SUPERFAMILY Protein kinase-like (PK-like) 473 775 IPR011009 -
Seca4g00220 880 MobiDBLite consensus disorder prediction 829 880 - -
Seca4g00220 880 Pfam Leucine rich repeat 125 185 IPR001611 GO:0005515
Seca4g00220 880 Pfam Leucine rich repeat 247 308 IPR001611 GO:0005515
Seca4g00220 880 MobiDBLite consensus disorder prediction 829 853 - -
Seca4g00220 880 ProSiteProfiles Leucine-rich repeat profile. 201 223 IPR001611 GO:0005515
Seca4g00220 880 Pfam Leucine rich repeat N-terminal domain 31 66 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00220 Seca-Chr4 3521966 3527641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00220 32 667 Miscellaneous Gene Families AT2G16250 54.559 0.0 696
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Seca4g00220 PK_Tyr_Ser-Thr 9.4e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00220 - - gmx:100805769 1390.17