Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00217 ATGGCTTCTGCAGAAATTGAGTACCGTTGCTTTGTTGGTGGGCTAGCCTGGGCCACCGACAACGATGCCCTCGAGAAAGCCTTCTCTCCCTATGGCGAGATCGTCGAATCGAAGGTCATCAACGATCGTGAGACTGGAAGGTCGAGAGGCTTTGGATTTGTCACCTTCGCTACGGAGCAGGCCATGAGGGATGCTATCGAAGGGATGAACGGCCAGAATCTTGATGGCCGTAACATTACTGTGAACGAGGCTCAGTCCCGTGGTAGGGGCGGGGGTGGCGGTGGCGGTTACGGAAGTGGTGGCGGCGGTGGCGGATATGGTGGCGGAGGTTATAGCCGTGGTGGTGGAGGAGGAGGATACGGAGGTGGTGGCCGACGTGAAGGTGGTGGTGGTGGTTACAACCGCAACGGTGGCGGAGGCTACGGTGGTGGCGGTGGTTATGGAGGAGGAGGTGGTGGTTATGGCGGTGGGCGAGACCGTGGGTATGGAGATGGTGGATCCCGCTACTCAAGGGGAGGTGGTGCTTCCGACGGAAGCTGGAGGAGTTAA 549 0.592 MASAEIEYRCFVGGLAWATDNDALEKAFSPYGEIVESKVINDRETGRSRGFGFVTFATEQAMRDAIEGMNGQNLDGRNITVNEAQSRGRGGGGGGGYGSGGGGGGYGGGGYSRGGGGGGYGGGGRREGGGGGYNRNGGGGYGGGGGYGGGGGGYGGGRDRGYGDGGSRYSRGGGASDGSWRS. 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00217 182 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Seca4g00217 182 FunFam Glycine-rich RNA-binding protein GRP1A 2 114 - -
Seca4g00217 182 SMART rrm1_1 9 82 IPR000504 GO:0003723
Seca4g00217 182 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Seca4g00217 182 Gene3D - 2 106 IPR012677 -
Seca4g00217 182 MobiDBLite consensus disorder prediction 148 182 - -
Seca4g00217 182 CDD RRM2_NsCP33_like 9 84 - -
Seca4g00217 182 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 6 163 - -
Seca4g00217 182 SUPERFAMILY RNA-binding domain, RBD 9 118 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00217 Seca-Chr4 3469131 3470613 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00217 10 88 Eukaryotic Initiation Factors Gene Family AT2G23350 35.443 7.04e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00217 - K13195 gmx:100777821 166.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00217 4 3469131 3470613 Seca4g00217 4 3469131 3470613 ECH