Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00212 ATGGCCTCAAGCAAACAAAAGGCTTGTGATTCATCTTGGAGTGCAAAGCAGAACAAGCTTTTTGAGAAGGCACTTGCAAAATATGACAAAGATACCCCTGACCGTTGGCAGAATGTAGCCAAAGCAGTTGGTGGTAAATCAGCAGAGGAAGTTAAGAGACACTATGAGTTACTCTTGGAAGATCTCAGACACATAGAGTCTGGTCATGTTCCCATTCCTAACTACAAATCCACAGGAACTGGCTATGAAGAATGA 255 0.4275 MASSKQKACDSSWSAKQNKLFEKALAKYDKDTPDRWQNVAKAVGGKSAEEVKRHYELLLEDLRHIESGHVPIPNYKSTGTGYEE. 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00212 84 ProSiteProfiles Myb-like domain profile. 5 59 IPR001005 -
Seca4g00212 84 ProSiteProfiles SANT domain profile. 10 63 IPR017884 -
Seca4g00212 84 Gene3D - 4 72 - -
Seca4g00212 84 FunFam Transcription factor SRM1 5 72 - -
Seca4g00212 84 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 80 IPR044636 GO:0003700
Seca4g00212 84 SMART sant 9 61 IPR001005 -
Seca4g00212 84 CDD SANT 12 59 IPR001005 -
Seca4g00212 84 SUPERFAMILY Homeodomain-like 11 67 IPR009057 -
Seca4g00212 84 Pfam Myb-like DNA-binding domain 11 56 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00212 Seca-Chr4 3439476 3441094 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca4g00212 Myb_DNA-binding 3.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00212 - - gmx:100785292 148.673