Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00211 ATGTTGCACTGTCTCAACACTTCCGGGAATCTAGCTGGGAGCTGTTCCGACATGACAGTGTTGGAAAGACAAAGAGCAAGGATGAAGTGGCAACAAGAACAAGGCTACTTTTCTGGAAATGGGTTCAATGGTGTGTTCTCTTCTTCTTCTCTGCATGTTCAGAATCAGAATTCTCAAGGGTCTATGATATTCTCTGCCGCTGCTGATTCTGGTTCTGCACTTGCTGAGGTAGTAGTGGCTGCTCACTCACACTCAATCAAACCTCTACCTGCTCCTGCTCCTGCCTTTGATGTCAATTCTGCAATTTCAAGGACTTTTAGCTGTCCACCTGTTCTGGCAGAGTCCGAAGCCACTGATTCTTCAATTGGGAAAGAGAGTTTCAAGAAGAGAAAAGCTGACAAGGCCCATCAGAATCATCCTCCTAAGGTTGTGGTAGAAAGTTATAACAAAGATAAGAAGATCAAAGTCGGTGCTGAAGATGGGGAATCCAAAATCACAAAAAATAACACAACCACCACTAATAGCAATACCAGAGGAACTTGTGCAGATACTTCAAATTCAAAGGCTTCTGAGGTTCAAAAGCCTGACTACATTCATGTCAGAGCACGGCGTGGTCAAGCCACTGATAGCCATAGCTTAGCTGAAAGAGTCAGAAGGGAAAAAATTAGCGAGAGAATGAAGTATTTGCAAGATTTAGTACCTGGTTGCAACAAAATCACAGGAAAAGCTGGAATGCTTGATGAAATCATCAATTATGTTCAGTCCCTTCAACGACAAGTTGAGTTCTTGTCAATGAAATTAGCTGCTGTAAACCCAAGGCTTGACTTCAACATTGATGATATGTTTAACAAAGAGGTGTTTCCTGCTTGTGATGCAACTTTTCAAGCCATGGGAATGTCTAGCCCTTCAGAAATGACTAACCCTGCTTATCTTCAGTTCAATTCACCACAGCAAATTGTTTCATATGGTGGATTAGATACAGGGATGAACCCTTCAGATATGGGGCTTAGAAGGACCATAAGTGCCCCTGTATCCATGCCTGAAACATTTCTTGACTCTTCATGTTTCTCTCAAATTCTACCCTCATCAACATGGGAAAATGATTTCCAAAACCTTTACGATTTGCCTTTTGATCAAGCACGAGCAACATCTTCCTTTCCCTCTCAGTCTCAGCTATTCACAGGCCTAGTGGATGCTAGCAATCTAAAGATGGAGATGTAG 1221 0.4242 MLHCLNTSGNLAGSCSDMTVLERQRARMKWQQEQGYFSGNGFNGVFSSSSLHVQNQNSQGSMIFSAAADSGSALAEVVVAAHSHSIKPLPAPAPAFDVNSAISRTFSCPPVLAESEATDSSIGKESFKKRKADKAHQNHPPKVVVESYNKDKKIKVGAEDGESKITKNNTTTTNSNTRGTCADTSNSKASEVQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNIDDMFNKEVFPACDATFQAMGMSSPSEMTNPAYLQFNSPQQIVSYGGLDTGMNPSDMGLRRTISAPVSMPETFLDSSCFSQILPSSTWENDFQNLYDLPFDQARATSSFPSQSQLFTGLVDASNLKMEM. 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00211 406 CDD bHLH_AtBPE_like 196 281 - -
Seca4g00211 406 MobiDBLite consensus disorder prediction 117 140 - -
Seca4g00211 406 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 206 256 IPR011598 GO:0046983
Seca4g00211 406 SMART finulus 212 262 IPR011598 GO:0046983
Seca4g00211 406 Pfam Helix-loop-helix DNA-binding domain 210 257 IPR011598 GO:0046983
Seca4g00211 406 Gene3D - 203 277 IPR036638 GO:0046983
Seca4g00211 406 MobiDBLite consensus disorder prediction 121 140 - -
Seca4g00211 406 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 103 304 IPR024097 GO:0006355
Seca4g00211 406 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 204 275 IPR036638 GO:0046983
Seca4g00211 406 FunFam Basic helix-loop-helix transcription factor 203 275 - -
Seca4g00211 406 MobiDBLite consensus disorder prediction 165 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00211 Seca-Chr4 3330942 3333793 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00211 9 373 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 38.501 4.79e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g00211 HLH 2.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00211 - - gmx:100798855 516.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00211 4 3330942 3333793 Seca4g00211 4 3330942 3333793 ECH
Seca4g00211 4 3330942 3333793 Seca10g00865 10 8285325 8287481 ECH