Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00187 ATGGCTCCAAAGAAGGACAAGGCTCCTCCACCTTCCTCCAAGCCCGCCAAGTCTGGCGGTGGCAAGCAGAAGAAGAAGAAGTGGAGCAAGGGAAAGCAGAAGGAGAAGGTGAATAACATGGTGCTGTTTGATCAGGGCACTTATGACAAGCTCCTCTCTGAGGCACCCAAATACAAGCTCATTACTCCTTCCATCCTCTCTGATCGTTTGAGGATTAATGGATCACTTGCAAGGAAGGCTATAAGAGAATTGATGGCTAGGGGTTCAATCAGGATGGTATCTGCCCACTCAAGCCAGCAGATTTACACCAGAGCTACAAACACCTAG 327 0.4893 MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGSIRMVSAHSSQQIYTRATNT. 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00187 108 FunFam 40S ribosomal protein S25 21 108 - -
Seca4g00187 108 Gene3D - 21 108 - -
Seca4g00187 108 MobiDBLite consensus disorder prediction 1 36 - -
Seca4g00187 108 PANTHER 40S RIBOSOMAL PROTEIN S25 1 108 IPR004977 -
Seca4g00187 108 Pfam S25 ribosomal protein 7 105 IPR004977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00187 Seca-Chr4 3015025 3017488 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00187 1 107 Cytoplasmic Ribosomal Protein Gene Family AT4G34555 93.458 4.09e-56 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00187 K02975 - gmx:100499810 160.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00187 4 3015025 3017488 Seca4g00187 4 3015025 3017488 ECH