Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00175 ATGATCAATTCCACTGTCAGACGCAGGACCCATTTAGTTCAATCCTTCTCAGTTGCCTTCCTTTACTGGCTTTACTACGTCTCCATGGCTTCTTCAAGTGGAACATCTTCAGGGTCATCCATGGTTCAAAGCCCTGGCTCAGAGGAGGATTTGCAAGTGCTGATGGATCAGAGGAAGAGGAAGAGAATGATATCAAACCGTGAATCAGCAAGGCGATCTCGAATGAGGAAACAGAAGCACTTGGATGATCTCTCTGCTCAGGTGGCTCAACTCAGGAACGAGAATCAGCAGATACTCACATCAGTGAACCTCACTACACAACGCTATTTAGCCGTTGAGGCTGAAAACTCAGTGCTGAGAGCACAAGTGGATGAGCTAAGCCACAGGCTAGAGTCTCTGAATGAGATAATCGATTTCTTGAATGCCACTAATGGTGTTTTTGCCCCTCCTTCTGTGGCACAAACCTCCTTCATTGACCCTCCTAATAGCTACTTCAACCCCTTGAATATGCCTTATCTCAACCAACCAATCATGGCTTCTGCAGATATATATCAGTACTGA 561 0.4581 MINSTVRRRTHLVQSFSVAFLYWLYYVSMASSSGTSSGSSMVQSPGSEEDLQVLMDQRKRKRMISNRESARRSRMRKQKHLDDLSAQVAQLRNENQQILTSVNLTTQRYLAVEAENSVLRAQVDELSHRLESLNEIIDFLNATNGVFAPPSVAQTSFIDPPNSYFNPLNMPYLNQPIMASADIYQY. 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00175 186 PANTHER BZIP TRANSCRIPTION FACTOR 44 30 183 - -
Seca4g00175 186 SMART brlzneu 54 118 IPR004827 GO:0003700|GO:0006355
Seca4g00175 186 SUPERFAMILY Leucine zipper domain 58 109 IPR046347 GO:0003700|GO:0006355
Seca4g00175 186 Coils Coil 74 101 - -
Seca4g00175 186 Coils Coil 116 143 - -
Seca4g00175 186 CDD bZIP_plant_GBF1 59 109 IPR045314 GO:0003700|GO:0006355
Seca4g00175 186 Gene3D - 56 111 - -
Seca4g00175 186 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 61 76 IPR004827 GO:0003700|GO:0006355
Seca4g00175 186 Pfam bZIP transcription factor 58 101 IPR004827 GO:0003700|GO:0006355
Seca4g00175 186 FunFam BZIP transcription factor 56 107 - -
Seca4g00175 186 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 56 119 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00175 Seca-Chr4 2690596 2691336 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00175 54 186 bZIP Transcription Factor Family AT4G34590 58.156 2.98e-50 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca4g00175 bZIP_1 2.6e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00175 K25786 - gmx:100101862 218.779