Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00171 ATGGGAGAGGCACCGCGCGGTGGTTGCTGTCCGCCGATGGATCTGTTCCGTTCGGAGCCGATGCAACTTGTTCAGCTCATCATTCCCATTGAATCCTCTCATCTTACTGTCTCTTACCTCGGCGACCTTGGTCTCCTTCAATTCAAAGATCTCAATGTAGAAAAGAGTCCGTTTCAACGAACTTATGCGACTCAGATAAAAAGATGTGGAGAGATGGCTCGTAAATTGCGTTTTTTCAAGGAGCAAATGTTGAAGGCCGGTGTTTCACCAATAGGTTCCACAACACAGGTTGATGCAAACATTGATGACCTTGAGGTAAAACTTACAGAACTTGAATCGGAGTTAACTGAGATGAATGCAAACAATGAAAAGTTGCAACGCTCTTACAATGAACTAGTGGAATATAAGCTTGTTCTACAGAAGGTTGGTGAATTTTTCCACTCAGCTCAGAGCCTAGCTATAGAGCATCAGAGAGAATATGAATCACGCCATCTGAGTGGCGAATCTATTGAAACACCTCTATTGCAGGACCAAGAATTGCTCACTGATTCATCGAAGCAAGTCAAGTTGGGGTTTTTAGCAGGTCTTATTCCCAGGGAAAAGTCCATGGCATTTGAGAGAATTTTATTTCGTGCTACTAGAGGCAACGTGTTTTTGAGGCAGGCCATTGTTGAGGATCCTGTCACAGACCCTGTTTCTGGAGAAAAGGTTGAGAAAAATGTGTTTGTGGTCTTCTATGCTGGTGAAAAAGCAAAAGCCAAGATTCTGAAAATATGTGAGGCATTTGGTGCTGATCGTTACCCTTTTGCTGAGGAACTAGGAAAACAATCTCAAATGATTTCAGAGGTTTCAGGAAGAATTTCAGAATTGAAGACCACGATAGATGCTGGACTGCTGCACCGGGACAACTTGCTACACACTATTGGGGTTCAATTTGAGCAATGGAATATTATGGTGAGGAAGGAGAAATCCATTTACCATACTCTGAACATGCTTAGCCTTGATGTGACCAAAAAATGTCTAGTGGCCGAGGGTTGGAGTCCTGTTTTCGCAACAAAGATGATTCAGGATGCATTGCAGCGGGCAGAACTTGACTCTAACTCCCAAGTCAGTGCCATTTTCCAGATTTTGCATACTAGGGAGATGCCACCTACCTATTTTCGCACAAACAAATTTACTTACGCATTTCAAGAAATTGTTGATTCATATGGGGTTGCTAAGTATCGGGAGGCAAATCCTACTGTATATACCATAATTACCTTTCCATTTCTTTTTGCTGTCATGTTTGGTGATTGGGGACATGGAATATGTTTACTACTGGGAGCACTTTTTTTCATAATCAGGGAGAAGAAACTTTCTAGCCAGAAACTTGGAGACATCACAGAGATGACTTTTGGAGGTCGTTATGTTATTTTGTTGATGGCCCTCTTCTCAATATTCACTGGTTTGATCTATAATGAGTTCTTCTCTGTTCCATTTGAACTCTTTGCTCCTTCAGCATATGCATGTCGTGACCTTTCTTGCAGGGATGCTACTACTGTTGGCCTGATAAAAGTGCGTCAAACTTACCCATTTGGAGTGGACCCTGTATGGCATGGAACACGAAGTGAATTACCATTTCTAAACTCATTGAAAATGAAAATGTCAATTCTTCTTGGGGTTGCCCAAATGAACCTTGGAATTATAATGAGCTTTTGCAATGCCACTTTCTTTGGAAATGGCTTAAATATATGGTTCCAATTTATTCCTGAGATTATATTTCTCAACAGTCTGTTTGGTTACCTATCTGCTCTCATTGTTGTGAAGTGGTGCACTGGTTCTCAAGCTGATTTGTACCATGTAATGATCTACATGTTCCTGAGCCCTACAGATGATTTGGGTGAAAACCAACTCTTTGCTGGTCAGAAAATTCTTCAGCTTGTGCTTTTACTTCTGGCCGTTGTCTCTGTGCCCTGGATGCTGATCCCAAAACCATTAATTTTGAAGAAGCAACATGAAGATGTATGCTTTCTTTTGAACTTTACTCAAGTTCTCTGTTTGTTCCTACATGAAACTTTTATCTTTGTTCTGGTTCTGATAGTTATGTTACTTCAGAGGCACCAGGGTGAATCTTATACACCACTTCAAAGCACAGAGGAAAGTTTGCAAGTGGAGTTAAATCATGATTCCCATGGTCATGAGGAATTTGAGTTCAGTGAAGTCTTTGTGCATCAACTCATACACACCATAGAATTTGTACTTGGAGCAGTCTCTAATACAGCTTCTTATCTTCGTCTATGGGCTCTTAGTCTTGCTCATTCAGAATTATCAAGTGTATTCTACGAGAAGGTTCTCATTATGGCATGGGGGTACAACAATGTGATTATCCTGATAGTGGGTTTCATTATCTTCGTTTTTGCTACCGTTGGAGTGTTACTTGTCATGGAAACTTTAAGTGCCTTCTTGCATGCTCTACGACTTCACTGGGTGGAGTACCAAAATAAGTTCTATGAGGGTGATGGTTACAAGTTCCACCCTTTCACCTTTTCATTGCTTGATGATGAGGATGACTGA 2553 0.4117 MGEAPRGGCCPPMDLFRSEPMQLVQLIIPIESSHLTVSYLGDLGLLQFKDLNVEKSPFQRTYATQIKRCGEMARKLRFFKEQMLKAGVSPIGSTTQVDANIDDLEVKLTELESELTEMNANNEKLQRSYNELVEYKLVLQKVGEFFHSAQSLAIEHQREYESRHLSGESIETPLLQDQELLTDSSKQVKLGFLAGLIPREKSMAFERILFRATRGNVFLRQAIVEDPVTDPVSGEKVEKNVFVVFYAGEKAKAKILKICEAFGADRYPFAEELGKQSQMISEVSGRISELKTTIDAGLLHRDNLLHTIGVQFEQWNIMVRKEKSIYHTLNMLSLDVTKKCLVAEGWSPVFATKMIQDALQRAELDSNSQVSAIFQILHTREMPPTYFRTNKFTYAFQEIVDSYGVAKYREANPTVYTIITFPFLFAVMFGDWGHGICLLLGALFFIIREKKLSSQKLGDITEMTFGGRYVILLMALFSIFTGLIYNEFFSVPFELFAPSAYACRDLSCRDATTVGLIKVRQTYPFGVDPVWHGTRSELPFLNSLKMKMSILLGVAQMNLGIIMSFCNATFFGNGLNIWFQFIPEIIFLNSLFGYLSALIVVKWCTGSQADLYHVMIYMFLSPTDDLGENQLFAGQKILQLVLLLLAVVSVPWMLIPKPLILKKQHEDVCFLLNFTQVLCLFLHETFIFVLVLIVMLLQRHQGESYTPLQSTEESLQVELNHDSHGHEEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLIMAWGYNNVIILIVGFIIFVFATVGVLLVMETLSAFLHALRLHWVEYQNKFYEGDGYKFHPFTFSLLDDEDD. 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00171 850 PANTHER VACUOLAR PROTON ATPASES 15 847 IPR002490 GO:0033179|GO:0046961|GO:1902600
Seca4g00171 850 Pfam V-type ATPase 116kDa subunit family 39 842 IPR002490 GO:0033179|GO:0046961|GO:1902600
Seca4g00171 850 Coils Coil 94 135 - -
Seca4g00171 850 PIRSF ATP6V0A1 11 850 IPR026028 GO:0000220|GO:0046961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00171 Seca-Chr4 2603338 2612286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00171 13 850 Primary Pumps ATPases(2) AT2G21410 74.374 0.0 1290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00171 K02154 - gmx:100810062 1407.89