Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00169 ATGGCTAAACCGAAAGCTTCGAAGCGAGCCCTAGAATCGTACACAGTCAAACACATAAACAAAACCATTAGAGCTGGCGATTGTGTACTTATGCGGCCCTCTGATCCATCGAAATCGTCGTATGTGGCTAGGGTTGAGCGGATCGAAGCCGATTCCCGTGGTGCGAACGTGAAGGTTAACGTTCGTTGGTACTATCGACCGGAAGAGTCAATCGGCGGCCGCCGTCAGTTCCATGGCTCCAAGGAAGTTTTTCTCTCCGATCACTTCGATTCTCAGAGCGCCGACACCATCGAGGCCAAGTGTATGGTCCACAGCTTCAAGAGCTATACTAAGCTTGATGCTGTTGGGAATGACGATTTCTTCTGTCGTTTTGAGTACAATTCCTCCACCGGGGCCTTCAATCCTGACAGAGTTGCTGTGTACTGTAAATGTGAGATGCCCTACAACCCAGATGACCTAATGGTCCAGTGTGAGGGCTGCAGTGATTGGTTTCATCCTGCTTGTATAGACATGACTGTGGAGGAAGCCAAAAGACTTGACCACTTCTATTGTGAAGGTTGTTCTGCTATAGATCAAAAGAAGTTGCAAAATTCTCATTCTGTTACAAGACTCTCGGATACAAAGGTATTTCTAATTACCGTTGTTTGA 648 0.4707 MAKPKASKRALESYTVKHINKTIRAGDCVLMRPSDPSKSSYVARVERIEADSRGANVKVNVRWYYRPEESIGGRRQFHGSKEVFLSDHFDSQSADTIEAKCMVHSFKSYTKLDAVGNDDFFCRFEYNSSTGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPACIDMTVEEAKRLDHFYCEGCSAIDQKKLQNSHSVTRLSDTKVFLITVV. 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00169 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 202 IPR013083 -
Seca4g00169 215 Gene3D - 1 135 IPR043151 -
Seca4g00169 215 SUPERFAMILY FYVE/PHD zinc finger 130 193 IPR011011 -
Seca4g00169 215 Pfam PHD-finger 141 188 IPR019787 -
Seca4g00169 215 SMART PHD_3 141 188 IPR001965 -
Seca4g00169 215 Pfam BAH domain 22 136 IPR001025 GO:0003682
Seca4g00169 215 PANTHER OS08G0421900 PROTEIN 5 208 - -
Seca4g00169 215 ProSitePatterns Zinc finger PHD-type signature. 142 187 IPR019786 -
Seca4g00169 215 ProSiteProfiles Zinc finger PHD-type profile. 139 190 IPR019787 -
Seca4g00169 215 SMART BAH_4 21 137 IPR001025 GO:0003682
Seca4g00169 215 FunFam Bromo-adjacent homology (BAH) domain-containing protein 134 204 - -
Seca4g00169 215 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00169 Seca-Chr4 2585895 2589612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00169 41 139 Core DNA Replication Machinery Family AT4G14700 29.293 8.23e-11 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca4g00169 BAH 2.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00169 K25868 - gmx:100787968 404.445