Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00168 ATGGCAACTTATTACACAAGTTCAAGTAATCAAAGGGATGCTGTGCCAATGCTCTGTCTTAGGGAGCCTTTGCCAAATTCATATCCTGAGACACCAATTCTTCCCAGCAATATAACATTATATATGAACTCTGGTTCATACTCAGAAGCATTGTCTGGCAATTCTCAGCAGCAAAATAATTGCTTTGTGATTCCATCAATAGGTGCTTCACATTCCACTCCTGAACAGCAAGAAATATTAGCAAATATGGGTGAGTTCCAAACTGGGGTTCATGATTTCTGTGCATGGAGGGAAGGTAGAAATGAGATGTTAGTCAGACAACCTATGGATGGACAGAGCTTGCAGGGTCATGGATTATCCCTCAGTCTTGGAACCCAAATACCCTCAGGAATCCAAATGCCTCCTATCCATGATAAGAATAATGATTCAAGTTTTGATTCGTTTTTGGGTGCTAATCCATCAATTTCAGGCAATGGGGCCTATAAAAGTGGCACATCTAGGGATGAAGGTATGAGACATTCTGAAAATTTTACACCTGGGTTATCTGAAGCTAGTCAAGATTTGAACAGAGGAGATTTTTCATTGCATGGAATGTCGAGTGTTGTAAGAACAGTTCCTAATACCAAATACCTCAATGCAGCACAGCAACTGCTTGATGAAGTTGTCGACATCCGGAAAGCTACTAAAAAACCTGTTATGAAAAGTCAGAGCACACATGAGGACTCTAAAAAAAATTCCAAGGAGGATGATGAACAATTAGAAAATCAAAGGCCTTCTGCAAATGGAGTGCCTAATTCTCAAGGTTCAGCTAGTAACTCCTCTTGTGAGCTTTCACATGCAGAAAAGCAAGATCTGCACAACAAGTTATCAAAGCTTTTGTCAATGTTGGATGAGGTTGACAGTAGGTACAAACAATATTATCATCAAATGCAAATTGTTGTGTCATCATTTGATGTGATAGCAGGACATGTGGCTGCTAAACCATATACAGCACTTGCTCTTCAAACCATTTCATGCCATTTTCGTTGTTTGCGTGATGCAATTACTGGGCAAATCAGTATAACACAAAAAAGCCTTGGAGAGCAAGATGCTTCTGGAAATAATAAAGGAGTTGGAATATCAAGACTTAGATATGTGGACCAACAAATCCGGCAACAGAGGGCTCTTCAGCAGCTTGGCATGACACAACATGCATGGAGGCCACAAAGGGGACTTCCAGAAAGCTCTGTTTCAATTCTTCGTGCTTGGCTGTTTGAGAATTTCCTTCATCCCTATCCAAAGGATTCTGATAAGCTCATGCTGGCAAAACAGACAGGCTTGAGTAGAAGTCAGGTCTCAAATTGGTTTATAAATGCACGCGTGCGTCTATGGAAACCTATGATTGAGGAGATGTACAAGCAAGAGTTTTGTGATGCAGACATGGACTCAAGTTCTACTTCTGAGAGTGCATCCAAGTTAACAAAAAGCGATGTCAAGACCTCCAATGATATGGGTGATGAATCGCAGCTCTGCCAAAGTTCAATGGCCAATAACAATTACGATGGACAAATTAAAGACCTCAGATCTGATCAAGTTCTTGATACAGAAATCATGGCGTCTACTGGATTAGCTAGTATCCAAAGTGGAGATCATGAGGCTGAAACTGAACATAGGTTAGTAAAGCAGACTGAGGAGCAAAGGCCAAACTTCGATGATTGTGGTTTCTTCCCACATGACACAGTTGTTGAGTCTGATGGAGCTAATAACAGGTTTATGGCAGTTGATCCAACGTGCCAAATGTCAGAGTTTGGAAACTTCAAGTCAGGAAGTGGAGTGTCTCTAACATTAGGTTTACAACATTATCAAGGAGGTAATTTTTTGCCTGGTGAGACCCATCTTGGTTTGGTTTCCATGAGGGAGGATGGCATCTACAATGCTAATGCAGCTTCTAACATAGAAGCTGAGACAGCAGAACTTGAGTGCATCAGTGTTGGAAACCAGCAACAAAGGTTCAGTTCACCTCATATGTTACATGATTTTGTAGTATGA 2028 0.4098 MATYYTSSSNQRDAVPMLCLREPLPNSYPETPILPSNITLYMNSGSYSEALSGNSQQQNNCFVIPSIGASHSTPEQQEILANMGEFQTGVHDFCAWREGRNEMLVRQPMDGQSLQGHGLSLSLGTQIPSGIQMPPIHDKNNDSSFDSFLGANPSISGNGAYKSGTSRDEGMRHSENFTPGLSEASQDLNRGDFSLHGMSSVVRTVPNTKYLNAAQQLLDEVVDIRKATKKPVMKSQSTHEDSKKNSKEDDEQLENQRPSANGVPNSQGSASNSSCELSHAEKQDLHNKLSKLLSMLDEVDSRYKQYYHQMQIVVSSFDVIAGHVAAKPYTALALQTISCHFRCLRDAITGQISITQKSLGEQDASGNNKGVGISRLRYVDQQIRQQRALQQLGMTQHAWRPQRGLPESSVSILRAWLFENFLHPYPKDSDKLMLAKQTGLSRSQVSNWFINARVRLWKPMIEEMYKQEFCDADMDSSSTSESASKLTKSDVKTSNDMGDESQLCQSSMANNNYDGQIKDLRSDQVLDTEIMASTGLASIQSGDHEAETEHRLVKQTEEQRPNFDDCGFFPHDTVVESDGANNRFMAVDPTCQMSEFGNFKSGSGVSLTLGLQHYQGGNFLPGETHLGLVSMREDGIYNANAASNIEAETAELECISVGNQQQRFSSPHMLHDFVV. 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00168 675 Pfam Homeobox KN domain 416 455 IPR008422 GO:0003677|GO:0006355
Seca4g00168 675 Gene3D - 394 472 - -
Seca4g00168 675 CDD homeodomain 399 460 IPR001356 GO:0003677
Seca4g00168 675 ProSiteProfiles 'Homeobox' domain profile. 396 459 IPR001356 GO:0003677
Seca4g00168 675 MobiDBLite consensus disorder prediction 229 255 - -
Seca4g00168 675 SMART prehox3 199 350 IPR006563 -
Seca4g00168 675 MobiDBLite consensus disorder prediction 156 189 - -
Seca4g00168 675 SUPERFAMILY Homeodomain-like 400 466 IPR009057 -
Seca4g00168 675 SMART HOX_1 399 463 IPR001356 GO:0003677
Seca4g00168 675 MobiDBLite consensus disorder prediction 474 501 - -
Seca4g00168 675 FunFam BEL1-like homeodomain protein 9 402 464 - -
Seca4g00168 675 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 120 483 - -
Seca4g00168 675 MobiDBLite consensus disorder prediction 229 281 - -
Seca4g00168 675 MobiDBLite consensus disorder prediction 256 278 - -
Seca4g00168 675 Pfam Associated with HOX 205 349 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00168 Seca-Chr4 2576100 2581324 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00168 583 675 Homeobox Transcription Factor Family AT4G34610 33.684 2.46e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Seca4g00168 POX 2.6e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00168 - - gmx:100801522 1003.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00168 4 2576100 2581324 Seca4g00168 4 2576100 2581324 ECH