Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00154 ATGAAGATCCAGTGTGATGTGTGTGACAAAGTAGAGGCCTCTGTGTTCTGTCCTGCAGATGAAGCAGCTCTTTGCCATAACTGTGATCGTACCATCCACCATGCCAACAAGCTGGCAGGCAAACACTCACGCTTCACTCTCCACCACCCAACCTCCAAAGACTCCCCTCTTTGTGATATCTGCCAAGAGAGGCGTGCATATCTATTTTGCCAAGAAGACAGAGCAATTCTTTGCATAGAATGTGACCTTTCTATCCACAGAGCAAATGAACATACACAGAAACATAATAGGTTTCTTCTCACCGGTTTGAAGCTCTCTAACACTTGTTTAGACCCAGACTCATCATCCACCAATGGTCCTAATAGAGTCACTGCCTCTAGATCCAAAGCAAACAGACCCAGATCAGTTTCAAATGAAAATCTAAGTTCTTCTTGCAAGGTTGAAGACAATATGGCTAGTGACACTGGTTCTGTTTCAACAAGCAGCATTTCTGAATACTTGATTGAAACAATACCTGGCTATTGTTTTGAAGACTTTCTTGATGCTTCTTTTGCACCTAATGGTTTCTGTAAGAATTATGGTTATCATTCGGAATTTCAGAACCAAGATCTTGAAGTTAGCACGTGTTTATTTCCGATTAGCCCTTCGAGTCTTCCTCAGATTAGTTCTTCGGTGGTTAGAGTTAAGGAAATTCCAAAAGCGAACACTGTCAAAGGGAACTCGAAACGTTGTACAGTTCCTGAAACTAGTCCTTCATTCATCAAAATATCTAGACGCTATCGATAA 786 0.416 MKIQCDVCDKVEASVFCPADEAALCHNCDRTIHHANKLAGKHSRFTLHHPTSKDSPLCDICQERRAYLFCQEDRAILCIECDLSIHRANEHTQKHNRFLLTGLKLSNTCLDPDSSSTNGPNRVTASRSKANRPRSVSNENLSSSCKVEDNMASDTGSVSTSSISEYLIETIPGYCFEDFLDASFAPNGFCKNYGYHSEFQNQDLEVSTCLFPISPSSLPQISSSVVRVKEIPKANTVKGNSKRCTVPETSPSFIKISRRYR. 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00154 261 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 228 - -
Seca4g00154 261 FunFam B-box zinc finger protein 21 1 98 - -
Seca4g00154 261 CDD Bbox1_BBX-like 5 47 - -
Seca4g00154 261 SMART bboxneu5 4 47 IPR000315 GO:0008270
Seca4g00154 261 SMART bboxneu5 53 100 IPR000315 GO:0008270
Seca4g00154 261 Gene3D Classic Zinc Finger 1 100 - -
Seca4g00154 261 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Seca4g00154 261 CDD Bbox1_BBX-like 57 100 - -
Seca4g00154 261 Pfam B-box zinc finger 55 92 IPR000315 GO:0008270
Seca4g00154 261 MobiDBLite consensus disorder prediction 111 156 - -
Seca4g00154 261 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00154 Seca-Chr4 2310296 2312202 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00154 1 191 C2C2-CO-like Transcription Factor Family AT1G75540 51.887 3.30e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca4g00154 zf-B_box 8.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00154 - - tpra:123898275 343.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00154 4 2310296 2312202 Seca4g00154 4 2310296 2312202 ECH