Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00150 ATGTATTGTATATATTTATTTAAATTGAAAAAAAAGGTACAGAATAGAACAGAGATACTGATAAGAGAGAAGGGAAAGAACGATAAAGTTAAAGAAATAGCTCAGACAAACCGAACCACACTTTGTTTCAAGTTCAAACCTAACGGAACTCGTGTGCGGTTTCCCCTCTCGTTCTTCTTCTCAGAAATGGAGTTTGCGGTGGCAAAAGCTTTGAAACCGAGTTTAAGGAGGGAGTTTTTTCAGCAAGCGCTTTGTGAAGAGATTTTTTGCTTGAACGCCAACACAGTGGTTGGTGGTGAGGATTTTTCCGTGGATGACCTCCTTGACTTCTCTAACGACGAGTTCCAACATGAGTATGACGAAGAAAAAGACAGTTTATCTGCTTCTTCCTCGCTCTCACAGGATAGCAACTCCAATTCCACCGGCGTTTCCTCTGATTCCATTTTCTCCACCGAATTAGCCGTTCCGGCTGGTGATTTGGCAGACCTAGAGTGGGTTTCTCACTTTGTGGATGACTCTATTCCAGAGCTCTCTCTTCTGTATCCGGTTCAGCAAACGAACCGGTGGGCTGAACCGGAGCAAAGAGTGTGTTCAGCGAAGAAAACTCCTCGTTTTCCCTCTGAAATGAAAATAACAACTAAGGCCAGAACCATGAAGAATAGAAAACCGAACCCTCGCGTCGGGTCACTTATCCCCTTGCTCTCGCGCCCGTCTTCGCCGTCGTCGTGTTCCTCCTCCGTGCTTTCATCGACGGCGCCACCGCCGCCTGTTGTGTTTGGCGAGCCGCCGGCGAAGAAGCAGAAGAGAAAGGCCGAGGCCCAGTTACAGAGACGGTGCAGTCATTGCCAAGTGCAGAAGACGCCGCAGTGGAGGACCGGTCCACTAGGCGCCAAAACCCTTTGCAACGCGTGCGGGGTTCGTTACAAGTCCGGTCGGCTTTTTTCAGAGTATAGACCGGCCTGCAGCCCCACCTTCTGCAGTGAGATTCACTCGAATAGCCACCGTAAAGTGTTGGAGATAAGGCGGAAGAAGGAGGTGGCTGGACTGGAGACCGGTTTGGCTCAGACTCAAATGGTCCCAACTTGCTGA 1089 0.4931 MYCIYLFKLKKKVQNRTEILIREKGKNDKVKEIAQTNRTTLCFKFKPNGTRVRFPLSFFFSEMEFAVAKALKPSLRREFFQQALCEEIFCLNANTVVGGEDFSVDDLLDFSNDEFQHEYDEEKDSLSASSSLSQDSNSNSTGVSSDSIFSTELAVPAGDLADLEWVSHFVDDSIPELSLLYPVQQTNRWAEPEQRVCSAKKTPRFPSEMKITTKARTMKNRKPNPRVGSLIPLLSRPSSPSSCSSSVLSSTAPPPPVVFGEPPAKKQKRKAEAQLQRRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFSEYRPACSPTFCSEIHSNSHRKVLEIRRKKEVAGLETGLAQTQMVPTC. 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00150 362 MobiDBLite consensus disorder prediction 126 145 - -
Seca4g00150 362 ProSitePatterns GATA-type zinc finger domain. 279 304 IPR000679 GO:0006355|GO:0043565
Seca4g00150 362 Pfam GATA zinc finger 279 312 IPR000679 GO:0006355|GO:0043565
Seca4g00150 362 Gene3D - 273 323 IPR013088 GO:0006355|GO:0008270
Seca4g00150 362 ProSiteProfiles GATA-type zinc finger domain profile. 273 309 IPR000679 GO:0006355|GO:0043565
Seca4g00150 362 PANTHER GATA TRANSCRIPTION FACTOR 89 348 - -
Seca4g00150 362 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 271 334 - -
Seca4g00150 362 CDD ZnF_GATA 278 335 IPR000679 GO:0006355|GO:0043565
Seca4g00150 362 MobiDBLite consensus disorder prediction 234 252 - -
Seca4g00150 362 MobiDBLite consensus disorder prediction 219 267 - -
Seca4g00150 362 MobiDBLite consensus disorder prediction 125 145 - -
Seca4g00150 362 SMART GATA_3 273 327 IPR000679 GO:0006355|GO:0043565
Seca4g00150 362 FunFam GATA transcription factor 268 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00150 Seca-Chr4 2207871 2209924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00150 70 360 C2C2-Gata Transcription Factor Family AT5G66320 40.240 2.23e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca4g00150 GATA 1.2e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00150 - - gmx:100780311 386.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00150 4 2207871 2209924 Seca4g00150 4 2207871 2209924 ECH
Seca4g00150 4 2207871 2209924 Seca6g00822 6 28164679 28166487 ECH