Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00142 ATGGATGCCGAAGACGAGGAACCTCTACCAAACAAATCTTCTCCTCCTCCACTCCAACAACACTCCGATTCACCGCCACACCTCTCACCCAATGCCTCACAATGCGACACCGACATTCAAAATTTCTCCAACGCCGGAGGAGGAGACGCGCTGCTGGCGCCACCCGTCCCTGGCGGAGACCTTGAGGCTGTGATCGCAGGGGAGTTGAGCCATGCGGGCACAAGTACGAAGAATAAAGAGGACAGCACGGTTGTTGGTGAAGCGGTGGTGCTTGCGGCTGATGTGACGAAGGAGACGGTGTCCGATTTGGGCGACGAAATGCAAGTGATGGACGTAGAGGGTAATGCCTCTGCCTCGTACGGGATTGGCATGGAAGATGAAACTGTGGAGGGGAAAGAGATTGGACGAACCGTTGTGGATGACGTGGCTTTGGAGGCCGGGAAGGTAGAAGAGGAAACCAATTTGGCAATCGAGGAGGACGAAGTCGGGGACGAGAAGACAAATGAAGCTGCTTTGATGGAAGAAGAAGAACAAGGAGAAGAACAAGAAGAACAAGGAGAAGAACAAGAAGAAGAAGCTGATGCTGATGGTGGTGTGGCAGAAGATAGAGAGGATGCTGAGGAGATAGAGGTGGATGAAGAGGGTGCCGAGGAGATAGAGGTGGCAGAAGAGGGTGCCGAGGAGATAGAGTTGGAGGAAGAGGGTCCCGAGGAGATAGAGGTAGCGGAGGAGCAGAGTCCAAGTGTCAGTGGTGGGAAGAGGAAGCGTGGGGGTGGGAAGAATGCTAAGTCTACAGGGAGAGTTCCATCCAGGAAAAAGATGGAAGAAGATGTTTGTTTCATTTGCTTCGATGGGGGTGACCTTGTGCTTTGCGACCGCAGGGGATGTCCCAAGGCATACCATCCTTCTTGCGTTAATCGTGATGAGGCCTTCTTTCGAGCCAAGGGAAAGTGGAATTGTGGTTGGCATCTTTGCAGCAACTGTGAGAAGAATGCATACTATATGTGCTATACATGCACATTCTCTTTGTGCAAGGGTTGCATCAAAGATGCTGTTATCATATGCGTTAGGGGAAACAAGGGCTTTTGTGAGACATGCATGAGAACTGTAATGTTGATTGAACAGAATGAGCAGGGAAACAACATGTGTAAACTAGAAGAATGGTGGAAGTTGGAAGATCTAGCAGTTGCAGATTTGCATTTAAGATACCTAATCACGATTAAGGGACAAGTGGATTTCAATGACAAAAACAGCTGGGAGTATCTCTTCAAGGACTACTACATAGATCTAAAAAAAAAGCTATCTCTAACATTTGATGAACTCACTCAAGCTAAAAACCCTTGGAAGGGATCTGATATGCTTCCTTCTAAAGAGGAATCACCAGATGAACTTTTTGATGCCAGTAATGATAGAGGATCAGATTCAGATAGCTCCTATGAGAATGTAGATTTGAGTCGTTCTAAAAGAAGAAAGGCCAAGAAACGGGCGAAATCCCGTTCCAAAGAAGGGAATTCATATAGTGCAGTGACAGTGCTTGGTGCTGATGGGCCATCTGCAGATGAAAGCTCTGAGTGGGCTTCAAAGGAGCTTTTGGAGTTCGTTATGCACATGAGAAATGGAGATAAATCTGTTTTGTCTCAGTTTGATGTACAGGCTCTTTTGCTAGAGTATATTAAAAGAAATAAGCTTCGAGATCCTCGCCGAAAAAGTCAAATAATTTGTGATGCAAGGCTTCAGAATTTGTTTGGTAAACCAAGAGTTGGACATTTTGAAATGTTAAAGCTTCTTGAATCCCATTTCCTTTTAAAAGAGGATTCTCAAGCTGAAGATCTACAGGGGAGTGTTGTTGATACTGAAGCTAGTCATTTGGAAGGTGATGGCAATTCTGATTCATATCTGAAAGCTGGAAAAGATAAGAGGCGTAAAAGTCGTAAAAAGGGCGATGAGAGAGGACTTCAATCTAATGTTGACGATTATGCAGCCATTGATAATCATAATATTACTTTAATTTATCTAAGACGTAATTTGGTGGAAGATCTACTTGAAGATACAGAGAAGTTTCATGAAAAAGTTGTTGGTTCTTTTGTGAGAATAAGAATTTCCAGTAGTGGTCAGAAGCAAGACTTGTATAGGCTGGTTCAGGTTGTAGGTACATGCAAAGCAACGGAGCCATATAAAGTTGGTAAAAGGATGACAGATATCTTGCTAGAAATCTTAAATTTAAACAAGACAGAGATTGTATCGATTGATATTATCTCAAATCAGGAGTTCACAGAGGATGAATGCAAGCGTCTTCGCCAAAGCATAAAATGTGGTCTCATAAATCGGCTGACTGTGGGTGACGTTCAGGACAAAGCACTGGTACTTCAGGAAGTCAGAGTAAAAGATTGGCTAGAAACAGAGACAGTGAGGCTAAGTCATCTTCGTGATAGAGCTAGTGAGAAAGGACGCAGAAAGGAATATCCTTTTCTATTCAGAAAAATTTAA 2487 0.4419 MDAEDEEPLPNKSSPPPLQQHSDSPPHLSPNASQCDTDIQNFSNAGGGDALLAPPVPGGDLEAVIAGELSHAGTSTKNKEDSTVVGEAVVLAADVTKETVSDLGDEMQVMDVEGNASASYGIGMEDETVEGKEIGRTVVDDVALEAGKVEEETNLAIEEDEVGDEKTNEAALMEEEEQGEEQEEQGEEQEEEADADGGVAEDREDAEEIEVDEEGAEEIEVAEEGAEEIELEEEGPEEIEVAEEQSPSVSGGKRKRGGGKNAKSTGRVPSRKKMEEDVCFICFDGGDLVLCDRRGCPKAYHPSCVNRDEAFFRAKGKWNCGWHLCSNCEKNAYYMCYTCTFSLCKGCIKDAVIICVRGNKGFCETCMRTVMLIEQNEQGNNMCKLEEWWKLEDLAVADLHLRYLITIKGQVDFNDKNSWEYLFKDYYIDLKKKLSLTFDELTQAKNPWKGSDMLPSKEESPDELFDASNDRGSDSDSSYENVDLSRSKRRKAKKRAKSRSKEGNSYSAVTVLGADGPSADESSEWASKELLEFVMHMRNGDKSVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDARLQNLFGKPRVGHFEMLKLLESHFLLKEDSQAEDLQGSVVDTEASHLEGDGNSDSYLKAGKDKRRKSRKKGDERGLQSNVDDYAAIDNHNITLIYLRRNLVEDLLEDTEKFHEKVVGSFVRIRISSSGQKQDLYRLVQVVGTCKATEPYKVGKRMTDILLEILNLNKTEIVSIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDVQDKALVLQEVRVKDWLETETVRLSHLRDRASEKGRRKEYPFLFRKI. 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00142 828 SUPERFAMILY SWIB/MDM2 domain 524 601 IPR036885 -
Seca4g00142 828 ProSitePatterns Zinc finger PHD-type signature. 279 339 IPR019786 -
Seca4g00142 828 SMART rtf1 661 771 IPR004343 GO:0003677
Seca4g00142 828 SUPERFAMILY Plus3-like 662 791 IPR036128 GO:0003677
Seca4g00142 828 MobiDBLite consensus disorder prediction 24 44 - -
Seca4g00142 828 MobiDBLite consensus disorder prediction 449 502 - -
Seca4g00142 828 MobiDBLite consensus disorder prediction 174 241 - -
Seca4g00142 828 CDD SWIB-MDM2_like 525 600 - -
Seca4g00142 828 CDD PHD5_NSD 278 323 - -
Seca4g00142 828 FunFam Zinc finger CCCH domain-containing protein 19 268 368 - -
Seca4g00142 828 ProSiteProfiles Plus3 domain profile. 661 794 IPR004343 GO:0003677
Seca4g00142 828 FunFam Zinc finger CCCH domain-containing protein 19 513 607 - -
Seca4g00142 828 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 367 IPR013083 -
Seca4g00142 828 FunFam Zinc finger CCCH domain-containing protein 19 662 791 - -
Seca4g00142 828 ProSiteProfiles Zinc finger PHD-type profile. 276 342 IPR019787 -
Seca4g00142 828 SMART PHD_3 278 324 IPR001965 -
Seca4g00142 828 Coils Coil 170 192 - -
Seca4g00142 828 Gene3D SWIB/MDM2 domain 515 610 IPR036885 -
Seca4g00142 828 Gene3D - 663 792 IPR036128 GO:0003677
Seca4g00142 828 MobiDBLite consensus disorder prediction 618 651 - -
Seca4g00142 828 Pfam Plus-3 domain 666 769 IPR004343 GO:0003677
Seca4g00142 828 SMART swib_2 534 605 IPR019835 -
Seca4g00142 828 MobiDBLite consensus disorder prediction 455 470 - -
Seca4g00142 828 ProSiteProfiles SWIB/MDM2 domain profile. 519 602 IPR003121 -
Seca4g00142 828 MobiDBLite consensus disorder prediction 149 269 - -
Seca4g00142 828 Pfam SWIB/MDM2 domain 527 600 IPR003121 -
Seca4g00142 828 SUPERFAMILY FYVE/PHD zinc finger 275 328 IPR011011 -
Seca4g00142 828 MobiDBLite consensus disorder prediction 1 60 - -
Seca4g00142 828 PANTHER UNCHARACTERIZED 153 820 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00142 Seca-Chr4 2136806 2149566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00142 276 363 PHD Transcription Factor Family AT5G36670 32.000 1.85e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Seca4g00142 Plus-3 2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00142 - - aprc:113865790 1027.7