Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00136 ATGCCAGCGCTTTGCGACGTTTGTAAGAGTGCCGCCGCGATTCTCTTCTGCGTTGCTGACGAGGCTGCTCTCTGCTATGCTTGCGATGATAAGGTCCATATGTGTAACAAGCTTGCTAATAAACACATTCGGGTTGGGCTTGCTGACCCCAGTGACGTTCCTCGCTGTGACATATGTGAAAATGCATCTGGTACTGAAGCTTTCTTTTACTGTAAGATAGATGGTAGTTCGTTGTGTCTACAATGTGATATGATGGCACATGTTGGTGGTAAAAGAACCCATGAAAGATATCTTCTATTGAGGCAGAGAGTTGAGTTTCCAGGTGACAAATCTGGCCGATTGGAAGAACTAGGGCTGCGACAACTGGATCAAAATGAATCACGGAAGGACAAAAGTCAGTCACTGATGCTAAAAACAAGAGATCGTCAGCAGAATGATAGGGTCTCTCCTGTTCCAATGCTAGAAAATGATGTTGAAGGTCATGGAAAAATGGATAAAAAATTAATTGATCTTAATACTAGACCACAATGGTTAAATGGACCAGACCAGCATTAA 555 0.4306 MPALCDVCKSAAAILFCVADEAALCYACDDKVHMCNKLANKHIRVGLADPSDVPRCDICENASGTEAFFYCKIDGSSLCLQCDMMAHVGGKRTHERYLLLRQRVEFPGDKSGRLEELGLRQLDQNESRKDKSQSLMLKTRDRQQNDRVSPVPMLENDVEGHGKMDKKLIDLNTRPQWLNGPDQH. 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00136 184 Gene3D Classic Zinc Finger 2 98 - -
Seca4g00136 184 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Seca4g00136 184 ProSiteProfiles Zinc finger B-box type profile. 54 99 IPR000315 GO:0008270
Seca4g00136 184 MobiDBLite consensus disorder prediction 124 145 - -
Seca4g00136 184 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 138 - -
Seca4g00136 184 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270
Seca4g00136 184 SMART bboxneu5 1 47 IPR000315 GO:0008270
Seca4g00136 184 SMART bboxneu5 51 99 IPR000315 GO:0008270
Seca4g00136 184 MobiDBLite consensus disorder prediction 124 184 - -
Seca4g00136 184 CDD Bbox1_BBX-like 4 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00136 Seca-Chr4 2057130 2059981 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00136 1 184 C2C2-CO-like Transcription Factor Family AT2G21320 54.891 3.84e-66 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca4g00136 zf-B_box 2.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00136 - - gmx:100527369 289.656