Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00120 ATGTCGCCGGCATCCGGAAATTGCAGCAAGATCCGGCACATTGTAAGGGTCCGGAAAATGCTAATGCGGTGGCGCAAGAAATCGTGCGTGAAGGCGCCGTTTGATGTCCCAGCGGGACACGTGGCGGTGTGTGTGGGTCCGAGCAGCATGAGGTTCGTGGTGCGCACGACGTACCTGAACCACCCGATCTTCCAGAAGCTTCTTTTGCAAGCGGAGGAAGAGTATGGGTTCTGCAACCATGGCCCGTTAACGATCCCGTGTGATGAATCGCTCTTCCAAGAGCTTTTGCGGGTTATGTCCAGGTCCGAGTCGACTCGGTTTTCTAACCTCGAAGATCATCAGAGGCGTTGCCACGTGGACGTCCCAAGTTTCCTTGACGTTGTTGGAGAATCCACTTCCACTTCCAGGCCTTTGCTTCATGACCAGCCTATTTGCTGA 438 0.5457 MSPASGNCSKIRHIVRVRKMLMRWRKKSCVKAPFDVPAGHVAVCVGPSSMRFVVRTTYLNHPIFQKLLLQAEEEYGFCNHGPLTIPCDESLFQELLRVMSRSESTRFSNLEDHQRRCHVDVPSFLDVVGESTSTSRPLLHDQPIC. 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00120 145 Pfam Auxin responsive protein 19 98 IPR003676 GO:0009733
Seca4g00120 145 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 24 95 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00120 Seca-Chr4 1812770 1813207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00120 6 139 Calmodulin-binding Proteins AT4G34750 45.578 7.90e-38 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00120 K14488 - jre:108986945 199.519