Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00115 ATGTCTAAAGATATGCATGATGAAAATGAAAATGAGGGATGTGAGAATGACGACTTTGAGAATGAATTGACTGAACGCCATGCTATTGACAACTTCCAAGACATTATTAAAAATAATCTTGTTTCCCAAAATCCTGAACAAATAATGTTGAAGTATGATTTTGTTAGTCTTGACATGGCTTATGGGTTTTATAATTGGTATGGGAGGTTTAATGGGTTTTCTGTGCGGAAAAGCAAGATAAGTTACAATTGTCAGAAGGAAGTTGTTGGTCGTGACTTTTTGTGCAACAAAGAAGGAAAACGAAGAAAACGAAACGATGATAGTGATTTAGAAGAAGAGCCAGAGCGAGAGCCTAAACCAGAGACTATGTGTGAGTGTAAAGCTAAGTTTCGTGTGCATATTGATTTTCATTCACGTCGGTGGTATGTGACTTGCTTTGATAATGTACATAACCATGCGGTACTGGAAGACAAGTTCTTTGGAATGCTACCAGCTCATAGGAATATGAGTGAAGGGGATATTATCGAGATGAATAATATGTTGAAGTCTGGTTTTGCTTCACTTGGGAAGTTAGCTAACAAATATTTTACTAGGGAAGTGTTCCGTGTTTTTCGTTTTGTGTTAGAGAGGGCATCCCATGTGAAAGTTGTTAGGTGGAAAGAAAAGTTCCCATGCATGATATACACTGTTTCAAAATATAGAAGACCAGGGAGGGAGTGGAATTTGACGTTTTACCCTACAGAAACTATCTATAAATGTTGTTGTATGAGAATGGAATCAATTGGTCTTCCATGTGACCATATAATTAGGGTTTTGGTCTACCAGGATGTTTCAGAAATACCAAGGTCATTAGTACATGATAGATGGTCAAAGGATGCAAAGTTGGGATTTCGTAGTGTGAGTACTGATGGTACTAATTTATGTGACCCTCAACTGACAGCTAGGTATTGGGGTTTGATGCATAGGTATAGGGATGCGGCACGTGAGGCATATGAAAATCTGGAAGATTACCATGATGCAAATGAGAATGCTATTAGTTTCCTGACTAAGTTGAGAGAAAAAAAAGGCTAG 1071 0.3782 MSKDMHDENENEGCENDDFENELTERHAIDNFQDIIKNNLVSQNPEQIMLKYDFVSLDMAYGFYNWYGRFNGFSVRKSKISYNCQKEVVGRDFLCNKEGKRRKRNDDSDLEEEPEREPKPETMCECKAKFRVHIDFHSRRWYVTCFDNVHNHAVLEDKFFGMLPAHRNMSEGDIIEMNNMLKSGFASLGKLANKYFTREVFRVFRFVLERASHVKVVRWKEKFPCMIYTVSKYRRPGREWNLTFYPTETIYKCCCMRMESIGLPCDHIIRVLVYQDVSEIPRSLVHDRWSKDAKLGFRSVSTDGTNLCDPQLTARYWGLMHRYRDAAREAYENLEDYHDANENAISFLTKLREKKG. 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00115 356 ProSiteProfiles Zinc finger SWIM-type profile. 228 276 IPR007527 GO:0008270
Seca4g00115 356 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 51 171 IPR031052 GO:0006355
Seca4g00115 356 Pfam FAR1 DNA-binding domain 63 155 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00115 Seca-Chr4 1735543 1741149 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g00115 FAR1 3.5e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00115 - - tpra:123913749 154.836