Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00107 ATGGTTCTGATTATTCATCATCATGTACTGAAGTTGATATCAATACTAATTACTCTCTGCACTTTATCAGGTACTGCACTTCTCTTTTTTCTACTAGTTCTGTTTTCAGTACTTGCTAACTGCCTTTGCTCATTTAGTCCTCAACCCTTCTCTGCAGATTGCTATGATCCGTTGGATCCCAATGGGAACATTTCGGTAACCTTTGACATTTACCAAAGTACAGATAATGGATATCTGGCAAGGGTGACTGTTCAAAACAATTATCTATATCGGCATGTAGATAAACCTGGTTGGAAACTAGGATGGACATGGGCTAACAATGAAGTGATATGGTCAATGAATGGTGCCTTTGCAACTGATAGAGGGAATTGCTTAGGTTATAGCGGTTCTCAGATACCACATTCCTGCAAGAAAGATCCTACCATAGTTGATCTCACTCCACAAGTCTCACAAAATAGGTCAGAGAATTGTTGTCGTGGTGGTCTCCTCTCTGCCTGGGCTATAGATCCTTTGAATTCATTCTCTTCATTTGAACTTGAAGTTCGCAACTTGGGGGAAAACCCACTTGGACAACCACCTACTAATCTCACATTGATGGCCCCAGGCCCTGGTTACACTTGTAGCCCTTTTCTGGATACTGATCCCACATTGTCCTCAGATTTTGGGGGACTAAGACAAGTTCCAGTTCTCATATGCTGTGTTTCCCTCTCAACATTTTACAATCCTACCATTACATCATGCCGTAATTGCAGTTGTGGATGCAGAGAAGCAGATATAAGTACAGTGTCTTGCATAAGGCCAGGTGACCCCTCACTACCACAGTCAAATGAGGATAACATAATTGAATGCAGTGACCACATGTGCCCAATTCGAGTCCATTGGCATTTCAAGAACAACTATATGGATCATTGGAGGGTGAAGCTTACAATTTCCAACTACAACTACAAGAGAAACTACTCAGACTGGAACGTATTGGTTCAACATCCTGGTTTCAGCCAAAAAGCAACAACTTACAGCTTCAACAGCACTAAACTTCCAGCCGTTGGGCTCCAAGATGGAGTTGCTCTTTTCTGGGGGATAGATTTTTACAACAGTGAGCTATTGCATTCTGATAAGGGTCGACAGGGTGTTGTGACAACAGAAATATTGTTGGAAAAAGATCCAAATTCTTTCACATTACGTAACGGATGGGCATTTCCGAGAAGAATATATTTCAACGGCGAGGATTGTGAAATGCCTTTACCTGACACGTTCCCTATGTTACCAAATGGTAGCTCCAGATTAAGACATACTTATTGTGGTTTCGATCAATTAGTATTGATTTCTTTGTTTCTTGTTCTACTACTACTTGGCAAAGCAAAGCAAGAAACTGCAATGGCTGCGCTTGGTGACCAATCTCCAGAGGAAGCCATGGTTGCCTCCAAACCTCAACCTCACAACAACAAACCCATTTCCAACATCGTCATCGTCATTGCTATGCAGACGGAGGCGCTTCCCGTTGTCAATAGGTTTCAGCTCACTGAAGACCCTCACTCTCCGTTTCCGGAAGGGGTTCCTTGGGTCCGTTATCATGGGACATACGAAGATCTCAATATGAACTTGATTTGGCCTGGAAAAGATCCAGGTTTGGGTAAGGATGTTTCTTCTTTTCAATTTATTTTGTCCTACACCACTTCCAACAAACAGGTTACAAGTCAAAAAGGGGAGAATACTGAATCGTTTGCTAAGTGCCAGCCAGCCCAATCCAAACCATTAAAAACAGGGAGTTCTGATCTAGTTCTATCCCAGCAGGGGGTTGATAGTGTAGGCACGATATCATCTGCCCTTGTAACATATGCTGCTATTCAAGCGTTACAGCCAGACTTGATCATAAATGCAGGTACTGCTGGTGGCTTCAAGGCCAAAGGAGCTAGCATTGGTGATATTTTCATTGCATCAGATTGTGCTTTTCACGACAGAAGAATACCCATACCTGTTTTTGATCTGTATGGTGTTGGTTTACGTAAAGCCTTTGAAACACCCAATCTTGTAAAGGAACTTAATCTAAAGGTGGCTAAATTGTCTACTGGTGACTCTTTAGATATGACACCGCAGGATGAATCGTCAATCATTGCAAATGATGCCACTGTCAAAGATATGGAGGGAGCAGCTGTTGCTTATGTTGCTGACCTTCTGAAAGTCCCTGCAATTTTTATAAAAGCTGTGACAGATATAGTTGATGGTGACAAACCAACCGCAGAAGAATTCCTGCAGAATTTGGCATCTGTAACTGCTGCACTTGACCTGGCTGTCGAACAAGTTATTAATTTTATTAATGGGAAGTGCGTATCTGAACTTTGA 2340 0.4218 MVLIIHHHVLKLISILITLCTLSGTALLFFLLVLFSVLANCLCSFSPQPFSADCYDPLDPNGNISVTFDIYQSTDNGYLARVTVQNNYLYRHVDKPGWKLGWTWANNEVIWSMNGAFATDRGNCLGYSGSQIPHSCKKDPTIVDLTPQVSQNRSENCCRGGLLSAWAIDPLNSFSSFELEVRNLGENPLGQPPTNLTLMAPGPGYTCSPFLDTDPTLSSDFGGLRQVPVLICCVSLSTFYNPTITSCRNCSCGCREADISTVSCIRPGDPSLPQSNEDNIIECSDHMCPIRVHWHFKNNYMDHWRVKLTISNYNYKRNYSDWNVLVQHPGFSQKATTYSFNSTKLPAVGLQDGVALFWGIDFYNSELLHSDKGRQGVVTTEILLEKDPNSFTLRNGWAFPRRIYFNGEDCEMPLPDTFPMLPNGSSRLRHTYCGFDQLVLISLFLVLLLLGKAKQETAMAALGDQSPEEAMVASKPQPHNNKPISNIVIVIAMQTEALPVVNRFQLTEDPHSPFPEGVPWVRYHGTYEDLNMNLIWPGKDPGLGKDVSSFQFILSYTTSNKQVTSQKGENTESFAKCQPAQSKPLKTGSSDLVLSQQGVDSVGTISSALVTYAAIQALQPDLIINAGTAGGFKAKGASIGDIFIASDCAFHDRRIPIPVFDLYGVGLRKAFETPNLVKELNLKVAKLSTGDSLDMTPQDESSIIANDATVKDMEGAAVAYVADLLKVPAIFIKAVTDIVDGDKPTAEEFLQNLASVTAALDLAVEQVINFINGKCVSEL. 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00107 779 Gene3D Nucleoside phosphorylase domain 475 546 IPR035994 GO:0003824|GO:0009116
Seca4g00107 779 Pfam Phosphorylase superfamily 591 767 IPR000845 GO:0003824|GO:0009116
Seca4g00107 779 PANTHER PROTEIN COBRA 42 428 IPR006918 GO:0010215|GO:0016020
Seca4g00107 779 Pfam COBRA-like protein 78 225 IPR006918 GO:0010215|GO:0016020
Seca4g00107 779 SUPERFAMILY Purine and uridine phosphorylases 602 759 IPR035994 GO:0003824|GO:0009116
Seca4g00107 779 Gene3D Nucleoside phosphorylase domain 557 779 IPR035994 GO:0003824|GO:0009116
Seca4g00107 779 CDD MTAN 591 759 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00107 Seca-Chr4 1542081 1551185 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00107 19 451 COBRA Gene Family AT3G02210 43.167 1.39e-122 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00107 - - ccaj:109801855 687.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00107 4 1542081 1551185 Seca4g00107 4 1542081 1551185 ECH