Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00088 ATGATAGTTGGTGGAAGATGTATTTTAGTGGGAATTGGAATTGATAGCCATAGCAAACAGTTGCTCAATTGGGCTCTTGTTAAAGTTGCTGAACCTGGGGACTCTGTTATTGCACTCCACATAGTTAAAACTCAAGATTTTGTTTCCGAGAGCAAAACCTTGGTTGATGATTATTTAGAGGTTTATGAAGGGTTATGCAATGTGAAAAAGATAGGTCTCTCCTGTGAGGTTTTGACAGGAAGTTCCATTCGAAACATTCTTGTCAACCAGGCAAAAACTCGTGCTGCTCTGGCTCTAGTCCTAGGGGGTAGAGCTTCCACAGCTAGATATTGCGCCAAACGACTACCACCCACCACCAATGTTATTGCTATCCAAGGTGCTAGAATTGTCTTCGGAAGGTGTACTAATAAACAACTAACAGGTTGTCTCATAGCGGATCCTAGACCAAGTCTTATTTGCACAGTGATCCGGTCTGCATTTGGTGAATCCGAGGTCAAGAGTGAGAAATCAACATGCCAAGATAACACAGAATTGGAGGAAGAAGCATTTGAGGGAGAGCAAAGTTGCAATAAAGTTTTATCAAGATCAATATCACAGTTTTCAGGTGACTCCACTCAGCAGAAGCTTGGGTGGCCCCTTCTCCGTAGGGCCTGTACAGATATAACACAGAGCCACGAGGATGCAAGGGACATGTCTGTAGTTCAATGGGTCATGAGCTTACCAGATCGTTCACCACAGAAAAATCCACTCATTAGGGACAATTCATCTGAAAGGGGCATCAGTAATATTGAGAATGAGAGCTATGAAACAGTTTCACCTCCATCACTTGAGCTGCCAAAGTGCCTGGAGGGGATTTTAAACATTAATACATTCAATAGCAAGTTGTTCAGCCTTGAGGTTCTTAAGTCTTGCGCTGGTCAATTTTCTTCAGAAAATCTGATTGGGAAAGGAGGGAGCAATCGTGTGTACAAAGGAATCCTCCCTGATGGGAAGCACATTGCAGTCAAAGTTTTACAGTCATCAAAAGAAGCCTTGAAAGATTTTGCCCGTGAGGTGGAGATAACATCCTCATTGAAACACAAAGGCATTACCCCTCTACTTGGAATTTGCATTGAGGACAGTGCTTTAATCTCTGTTTATGATTATTTCCCCAAAGGTAGCTTAGAGGATAATCTGAAAGGCAAGAACAAGGATGGATCTTTCTTGTCATGGGAAGTCAGATTTAATGTAGCTGTTGGGATTGCTGAAGCACTCAATTACCTACACAACGAAACCTCAAAGCCTATTATACACAGAGATGTCAAGTCTTCCAACATTCTTCTTTCCAATGGGTTTGAGCCACAATTATCTGATTTTGGACTCGCTATATGGGGTCCAACAACTTCATCTTTTCTAACACAAGACGATGTAGTAGGAACATTTGGTTATCTTGCACCTGAATACTTCATGTATGGAAAGGTGAGTGACAAGATAGACGTCTATGCCTTTGGTGTAGTGCTACTTGAACTAATTTCAGGAAGGGAGCCAATCAGCTCTGAAACTTGCGAAGGACAGGAGAGTTTGGTTATGTGGGCAAAACCATTATTAGAGAGTGGGGATGTTGATAGCTTACTGGACCCAAATTTGCAAGGCAAGTTTGATGCCGCACAAGTGCAAAAAATGGTTCTGGTAGCATCTCTATGCATTACACGGGCTGCGCGGCTTCGTCCTACATTGAATCAGATACTGAAGATATTAAAAGGATATGATGAGAAAGTCGAGAACTTGTTTAGCTCCCACGAGAATGATCGTGACCATTCGGAAAATCAGGAAAATATTGATGATGAAGTGTATCCAAATTCAAGTGCAGAGTTACACTTGAGCCTTGCATTACTTGATGTTGACAATGACACTACATCATTTAGTAGTATAGAGCATAGCAAAAGTGAACATTTGAAAGAACGATGGAGCAGATCATCTAGTTTCAATTAA 1971 0.416 MIVGGRCILVGIGIDSHSKQLLNWALVKVAEPGDSVIALHIVKTQDFVSESKTLVDDYLEVYEGLCNVKKIGLSCEVLTGSSIRNILVNQAKTRAALALVLGGRASTARYCAKRLPPTTNVIAIQGARIVFGRCTNKQLTGCLIADPRPSLICTVIRSAFGESEVKSEKSTCQDNTELEEEAFEGEQSCNKVLSRSISQFSGDSTQQKLGWPLLRRACTDITQSHEDARDMSVVQWVMSLPDRSPQKNPLIRDNSSERGISNIENESYETVSPPSLELPKCLEGILNINTFNSKLFSLEVLKSCAGQFSSENLIGKGGSNRVYKGILPDGKHIAVKVLQSSKEALKDFAREVEITSSLKHKGITPLLGICIEDSALISVYDYFPKGSLEDNLKGKNKDGSFLSWEVRFNVAVGIAEALNYLHNETSKPIIHRDVKSSNILLSNGFEPQLSDFGLAIWGPTTSSFLTQDDVVGTFGYLAPEYFMYGKVSDKIDVYAFGVVLLELISGREPISSETCEGQESLVMWAKPLLESGDVDSLLDPNLQGKFDAAQVQKMVLVASLCITRAARLRPTLNQILKILKGYDEKVENLFSSHENDRDHSENQENIDDEVYPNSSAELHLSLALLDVDNDTTSFSSIEHSKSEHLKERWSRSSSFN. 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00088 656 Gene3D Transferase(Phosphotransferase) domain 1 383 609 - -
Seca4g00088 656 SUPERFAMILY Protein kinase-like (PK-like) 290 579 IPR011009 -
Seca4g00088 656 PANTHER OS08G0249100 PROTEIN 169 607 IPR046958 -
Seca4g00088 656 MobiDBLite consensus disorder prediction 244 269 - -
Seca4g00088 656 FunFam Putative receptor-like serine/threonine-protein kinase 383 595 - -
Seca4g00088 656 CDD USP_Like 8 116 - -
Seca4g00088 656 ProSiteProfiles Protein kinase domain profile. 308 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g00088 656 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 7 116 - -
Seca4g00088 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 429 441 IPR008271 GO:0004672|GO:0006468
Seca4g00088 656 Pfam Protein kinase domain 309 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g00088 656 MobiDBLite consensus disorder prediction 248 269 - -
Seca4g00088 656 Gene3D Phosphorylase Kinase; domain 1 282 382 - -
Seca4g00088 656 SMART serkin_6 308 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g00088 656 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 277 382 - -
Seca4g00088 656 MobiDBLite consensus disorder prediction 636 656 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00088 Seca-Chr4 1336218 1339983 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00088 296 579 Trihelix Transcription Factor Family AT1G70460 43.253 3.84e-69 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Seca4g00088 Pkinase 1.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00088 - - gmx:100789189 890.952