Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00085 ATGTCAAGCCACCAAGATGACCTGGATCTCCTGCTTTCCCTCCAGGATAGGGTTCCTGAAACCCCTCCTGCTTCTCCCTCCCCAGGTTACCTGTCCGATTCCGATGGGTCTCCCAAGCAAAAGGAGAAGCCCGATATGTCTGTATTCAAAAATGCTGTTGAAGATTGCCTTTCTTACCATCCCCCTAATCCTAACCCTAACCCTAAACCAAAATCCAAACCTTCTCTCACCAACGATGCCAACGTTGACAGGTTTTCTGGTCTTCGAATAAGGAACCAATTGTTAACCCCTGCTGAGCTTAAGGAATCGTTTTCAGACATTCGTTTTGTTCGGCTATCAGTTATCAAGAATTTGTTGATTGGGGATAATTTTTCCGGAAGTTGGGTGACTGTTGGAGTGTTGACGGAGAAGGGGATTCAGAAAACGAGTTCCACAGGGAAGAGCTATTGTATATGGAAAATTGGGTGTTTGGATGAAAGTACTGTTTCTCTTTTCCTGTTTGGCGATGCTTATCAAAGGAATATGCAAGAGCAGGCAGGAACGGTCTTTGCACTATTTAATTGTGCTGTCCGCAAGGATGCCAAGGGCAATGGCTTTTCTTTGAGCATATACACCCCTAGTCAAATTTTGAAGATGGGGACCTCTGCTGATTATGGAGTTTGCAAAGGGAAAAGATCGGATGGAATGGCTTGTACGATGGTCATAAATAAACGTCATGGTACATATTGTAAATATCATAAATCAAAAGCATCGGAAAAATATTCCACCATGCGAACTGAACTCAAGGGAGGCAGAAATTTAAGAACAGCATTTAGGCCTAGGGATCATCTCAGGTCAGAAGGAATTTACTTAGTTGACCCTCTTGCTGACAAAACAAACTTGAAAAAGTCACAGCCAGTGAAATTGTTGTCTGTGGATGGTCTTAGAAAGGCATTGAGCAATGCAGGAAAAGTAACAACAACTTCACACTCGCAAGGGATTAGATTTCTTTCTGAGGTCACAGGAAAATTTGATCCAAAAATGAATAAAGGGCCAAAGACTCCAAATGAACAACACAATTGCACAGAGAAGAGGTCAGTTGCAAAAAAGATTCTAGGTTAA 1101 0.4242 MSSHQDDLDLLLSLQDRVPETPPASPSPGYLSDSDGSPKQKEKPDMSVFKNAVEDCLSYHPPNPNPNPKPKSKPSLTNDANVDRFSGLRIRNQLLTPAELKESFSDIRFVRLSVIKNLLIGDNFSGSWVTVGVLTEKGIQKTSSTGKSYCIWKIGCLDESTVSLFLFGDAYQRNMQEQAGTVFALFNCAVRKDAKGNGFSLSIYTPSQILKMGTSADYGVCKGKRSDGMACTMVINKRHGTYCKYHKSKASEKYSTMRTELKGGRNLRTAFRPRDHLRSEGIYLVDPLADKTNLKKSQPVKLLSVDGLRKALSNAGKVTTTSHSQGIRFLSEVTGKFDPKMNKGPKTPNEQHNCTEKRSVAKKILG. 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00085 366 PANTHER PROTEIN MCM10 HOMOLOG 34 317 IPR040184 GO:0003690|GO:0003697|GO:0006270
Seca4g00085 366 MobiDBLite consensus disorder prediction 339 366 - -
Seca4g00085 366 Gene3D - 74 247 IPR012340 -
Seca4g00085 366 FunFam DNA replication licensing factor mcm10 74 248 - -
Seca4g00085 366 Pfam Primase zinc finger 213 258 IPR015408 GO:0005634|GO:0006260
Seca4g00085 366 MobiDBLite consensus disorder prediction 350 366 - -
Seca4g00085 366 MobiDBLite consensus disorder prediction 1 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00085 Seca-Chr4 1319547 1323042 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00085 17 363 Core DNA Replication Machinery Family AT2G20980 58.807 6.43e-135 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00085 K10736 - gmx:100527758 536.954