LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g00079	ATGGGGCGCGTTAGGACGAAGACGGTGAAGAAGTCGTCTCGGCAAGTGATAGAGAGGTACTACTCTCGGATGACGCTGGACTTCCACACGAACAAGAAGGTTCTGGAGGAGGTGGCCATCATACCTTCCAAGAGGCTGCGAAACAAGATCGCCGGGTTCTCCACACATCTCATGAAGCGCATCCAGAAGGGACCAGTGCGTGGCATCTCCCTCAAGCTTCAGGAGGAAGAGCGTGAGCGTCGCATGGACTTCGTACCTGACGTCTCTGCCATTAGGACAGAGCAGATCGAGGTCGACAAGGAGACTCTCGACATGCTCGCCGCCCTTGGCATGTCCGATATCCCAGGCGTCGTCCAGGTCGATCCCCTTCCCGTCCAGCAACGCCTTCCTTTTGGTAGGAGGTATTAG	408	0.5637	MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIRTEQIEVDKETLDMLAALGMSDIPGVVQVDPLPVQQRLPFGRRY.	136

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g00079	135	Gene3D	-	1	62	IPR036401	GO:0003735\|GO:0005840\|GO:0006412
	Seca4g00079	135	PANTHER	40S RIBOSOMAL PROTEIN S17	1	123	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Seca4g00079	135	Pfam	Ribosomal S17	1	120	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Seca4g00079	135	SUPERFAMILY	Rps17e-like	1	62	IPR036401	GO:0003735\|GO:0005840\|GO:0006412
	Seca4g00079	135	Hamap	30S ribosomal protein S17e [rps17e].	1	63	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Seca4g00079	135	ProSitePatterns	Ribosomal protein S17e signature.	41	56	IPR018273	GO:0003735\|GO:0005840\|GO:0006412
	Seca4g00079	135	FunFam	40S ribosomal protein S17	1	62	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g00079	Seca-Chr4	1242999	1243406	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca4g00079	1	122	Cytoplasmic Ribosomal Protein Gene Family	AT5G04800	88.525	1.23e-77	224

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g00079	K02962		-	gmx:100785402	244.202