Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00076 ATGGGAAGGTCCCCTTGTTGTGAGAAAGCTCACACAAATAAAGGAGCATGGACGAAAGAAGAAGATGATAGGCTGATAGCTTATATTAGAGCTCATGGTGAGGGATGTTGGCGCTCACTCCCCAAAGCCGCCGGTCTTCTCCGCTGCGGCAAGAGTTGCCGTCTCCGATGGATCAATTATCTCCGCCCTGACCTCAAACGTGGCAATTTCACCCAACAAGAAGATGAACTCATCATCAAACTCCATAGTCTCCTTGGTAACAAGTGGTCTCTAATAGCTGGAAGATTGCCTGGGAGAACAGACAATGAGATAAAGAATTACTGGAATACTCACATAAGAAGGAAGCTTTTGAGCAGAGGAATTGACCCTGCAACTCACAGGCCTCTCAATCAAGAATCAATTACTGCTAGTGCCAACACAATATCTTTCGCTTCTGAAGAACAAGAGAATAATAAAGAACGCTGCCCTGACTTGAACCTTGACCTTACCATTTGTCCTCCACATCATGATGATCAGAGTATAGAGATCAGAAGCCTTTGCTTTGGCAACACTGTTACTGGTGTTGGTGAGACCATCATCGACACTGCTACTGGTTACGATTTCTTGGGCTTGAAAACCACCACTACTGCTCTCGATTACAGAAGCAAAAGCAAGCTTGGAAATGAAATTCAATTAAATTTAGTTGGAGAGGAATGA 696 0.4425 MGRSPCCEKAHTNKGAWTKEEDDRLIAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTQQEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPATHRPLNQESITASANTISFASEEQENNKERCPDLNLDLTICPPHHDDQSIEIRSLCFGNTVTGVGETIIDTATGYDFLGLKTTTTALDYRSKSKLGNEIQLNLVGEE. 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00076 231 FunFam MYB-related transcription factor 13 66 - -
Seca4g00076 231 CDD SANT 69 112 IPR001005 -
Seca4g00076 231 Gene3D - 68 154 - -
Seca4g00076 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca4g00076 231 CDD SANT 16 61 IPR001005 -
Seca4g00076 231 SMART sant 66 114 IPR001005 -
Seca4g00076 231 SMART sant 13 63 IPR001005 -
Seca4g00076 231 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca4g00076 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca4g00076 231 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Seca4g00076 231 Gene3D - 14 66 - -
Seca4g00076 231 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca4g00076 231 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca4g00076 231 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Seca4g00076 231 FunFam Myb transcription factor 68 137 - -
Seca4g00076 231 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00076 Seca-Chr4 1227170 1228355 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00076 1 215 MYB Transcription Factor Family AT4G38620 55.396 6.88e-96 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca4g00076 Myb_DNA-binding 2.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00076 K09422 - tcc:18607558 325.865