Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00061 ATGGACGGCGATGTTGGGCGTTGGGCGTTGGAGTTCCTTCTTGGGAAGCCATTCAGAGTCACAGACAGTAACCTAATTAAGAGAATGATTTGCAGTATCCCTCTTTCAGACAACGATTCCTTCCTGAAGAAGTCTATTCTCCTCAAAACCCTTGAAGACGAGTTGTCCACCGTCTCTATTCAAGAGTCCATGCTTGAAATTCTCGAGATCCTAGAAGAAGTCCTTCGTTGCGATGGCTCTCCAATCACCGCCGCCATGAGAGCCGCATATTGTGGCGTTGCAGTGGAGTGTACTCTCAAGTATCTGGAACTCGAACTCTCCCACCCTGCCTACATCGACGCCGTCCAGAGGATATGGTCGGATAGGATATGCTACATGGAGCCCTCACGTTCTAGTGAAGGAAGCCTCTTGTTCTCCGCCGAATTGAACCGTTGGAGAATTGAGATTGAGGCTTCCCTTTCGGACTCGCGAGTCATGGACAGGTTGGCGGCCATACCGAATACCAGAAGGGACGCCATTAAAAAGATCAAGGCTTATTTGGCTGAAGCCTGGGCAAATATTGGTCCTTCTTTTCTTGATTTAGCATCAGTGTCCTTGCCCACAAATCAGGGCTTGCGCAGATTATTGCCCAATTCGGTGGCGACGAGTAATAATGTACCCACTGCTGAAGAATTCAGTGTGAGTGACTTGCCTGTGTCTCCAATAGAAATTTGGAAAGACAATCAACTGCTTAAAGACAAGAATTATACTACTACTGGTATTGAGGAAATGGACCCATCAACAACGTGTAGCAAAATTGACTCTCTGCCAAGTCATGAAGTCCAACAGGTTGGGGAATCTCTTGAATGCAATTCTATGGCATTGCACACCTTGACCAAGGATTCTCTGCCCAATTCATTGCATATGACTGACGTTGTAAGATCTGAGTTGACAGTTAAAGAAATAAATCAGGATCCACCTGTGGAAGAAAACAAGAGTAGTGATGCAGATGTAACTGATCCACATGCTTGCCAGGGTATTAACAATAATGAGGCTAATCTTAACAAGACAACTTCTGTCCATCACAGTGATGTTCAACACCCCAGCTTGATGGAACCAAATAGTACTGCTCGTACTCATGAGAGTATTAACAATAATGAGACTAATCTTAACAAGACAACTTCTGTCCGTCAGAGTGATGTTCAACGCCCTAGCTTGATGGAACCAAATAGTACCGCTCGTACTCATGAGTGGGATGATTCGATAGATGGCTTGCAAGGGGAAACATCAAATGATGCAAGAAGATTTCATTTACCTAGCCCAAAGAGGGAGAAACTTTCTCCATTGAAGAAGTATGAACCAACAAACATTACAAAAAGGAGAAAAGTAAAAAAATGGAGTGAGCTAGAGGAGGAGACTTTAAGGACTGCTGTAAATAAATTTGGCAAAGGAAATTGGAAATGGATTCTCAATTCTTACAGAGAGATATTTGAAAATAGAACTGACGTTGATTTGAAGGATAAGTGGAGAAATATGTCCCGGTATGGAAACAAATGA 1536 0.4355 MDGDVGRWALEFLLGKPFRVTDSNLIKRMICSIPLSDNDSFLKKSILLKTLEDELSTVSIQESMLEILEILEEVLRCDGSPITAAMRAAYCGVAVECTLKYLELELSHPAYIDAVQRIWSDRICYMEPSRSSEGSLLFSAELNRWRIEIEASLSDSRVMDRLAAIPNTRRDAIKKIKAYLAEAWANIGPSFLDLASVSLPTNQGLRRLLPNSVATSNNVPTAEEFSVSDLPVSPIEIWKDNQLLKDKNYTTTGIEEMDPSTTCSKIDSLPSHEVQQVGESLECNSMALHTLTKDSLPNSLHMTDVVRSELTVKEINQDPPVEENKSSDADVTDPHACQGINNNEANLNKTTSVHHSDVQHPSLMEPNSTARTHESINNNETNLNKTTSVRQSDVQRPSLMEPNSTARTHEWDDSIDGLQGETSNDARRFHLPSPKREKLSPLKKYEPTNITKRRKVKKWSELEEETLRTAVNKFGKGNWKWILNSYREIFENRTDVDLKDKWRNMSRYGNK. 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00061 511 Gene3D - 448 509 - -
Seca4g00061 511 SUPERFAMILY Homeodomain-like 458 509 IPR009057 -
Seca4g00061 511 PANTHER MYB TRANSCRIPTION FACTOR 1 374 - -
Seca4g00061 511 Pfam Myb-like DNA-binding domain 457 504 IPR001005 -
Seca4g00061 511 MobiDBLite consensus disorder prediction 316 330 - -
Seca4g00061 511 CDD SANT_TRF 457 507 - -
Seca4g00061 511 ProSiteProfiles Myb-like domain profile. 451 506 IPR001005 -
Seca4g00061 511 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 451 510 IPR017930 -
Seca4g00061 511 SMART sant 455 508 IPR001005 -
Seca4g00061 511 MobiDBLite consensus disorder prediction 312 440 - -
Seca4g00061 511 MobiDBLite consensus disorder prediction 336 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00061 Seca-Chr4 1024294 1028398 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00061 401 505 Single Myb Histone (SMH) Gene Family AT1G15720 40.952 1.70e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca4g00061 Myb_DNA-binding 5.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00061 - K11111 psat:127081272 451.055