Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00055 ATGGCAACTCAAATGAGCAAGAAGAGAAAGTTTGTTGCTGATGGCGTGTTCTTCGCCGAACTGAACGAGGTTCTGACCCGAGAGCTCGCTGAGGATGGTTACTCAGGTGTGGAGGTTAGGGTTACCCCGATGCGCACTGAGATCATCATCAGAGCCACTCGAACCCAGGCCGTTCTTGGTGAGAAGGGAAGGAGAATTAGGGAGCTTACCTCAGTGGTACAGAAGAGGTTCAAGTTTCCTGAGAACAATGTAGAACTCTACGCTGAAAAGGTCAACAACAGGGGCCTTTGTGCTATTGCTCAGGCCGAGTCTCTCCGCTACAAGCTCCTTGGTGGCCTAGCTGTTCGGAGGGCCTGCTATGGTGTTTTGCGATTTGTTATGGAAAGTGGTGCTAAGGGATGCGAGGTCATTGTCAGTGGAAAATTGAGAGCCCAGAGGGCCAAATCCATGAAGTTCAAGGATGGGTACATGATTTCTTCTGGGCAACCAGTCAAGGATTACATTGACTCTGCAGTGAGGCATGTGCTCCTCAGACAGGGTGTTCTTGGTATCAAGGTGAAGATCATGCTTGATTGGGATCCTAAAGGGAAACAGGGTCCTAAAACGCCCCTCCCTGATATTGTCACAATCCACACTCCAAAAGAGGAAGAGGAATACACCCAGCCTGCTGCTGCTGTTTTGTCGACTGATATTGAGGTCCCTGTCGCTTGA 711 0.4993 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENNVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYTQPAAAVLSTDIEVPVA. 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00055 236 FunFam 40S ribosomal protein S3 93 228 - -
Seca4g00055 236 CDD KH-II_40S_S3 5 95 - -
Seca4g00055 236 FunFam 40S ribosomal protein S3 1 92 - -
Seca4g00055 236 ProSiteProfiles Type-2 KH domain profile. 21 92 IPR004044 GO:0003723
Seca4g00055 236 Pfam KH domain 20 93 IPR004044 GO:0003723
Seca4g00055 236 SUPERFAMILY Ribosomal protein S3 C-terminal domain 93 191 IPR036419 -
Seca4g00055 236 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 99 IPR009019 GO:0003723
Seca4g00055 236 Gene3D - 93 231 IPR036419 -
Seca4g00055 236 NCBIfam 30S ribosomal protein S3 8 210 IPR005703 GO:0003735|GO:0006412|GO:0015935
Seca4g00055 236 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 6 198 - -
Seca4g00055 236 Pfam Ribosomal protein S3, C-terminal domain 106 188 IPR001351 GO:0003735|GO:0006412
Seca4g00055 236 Gene3D - 1 91 IPR015946 -
Seca4g00055 236 ProSitePatterns Ribosomal protein S3 signature. 147 183 IPR018280 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00055 Seca-Chr4 906777 908779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00055 1 226 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 89.381 4.50e-152 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00055 K02985 - gmx:100795581 447.588