Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00051 ATGTCGAAGGAAGTGAGCGAAGAAGGACACCAAACCCATCACGGGAAAGACTACGTTGACCCACCACCGGCACCTCTCATCGACTTGGCTGAGATTAAGCTCTGGTCCTTTTACAGAGCTCTCATTGCTGAGTTCATAGCTACTCTCCTCTTCCTCTATGTCACCGTCGCCACCGTCATCGGCCACAAGAAACAAACTGGACCATGCGACGGTGTTGGCCTTCTCGGCATAGCCTGGGCCTTCGGTGGCATGATCTTTGTCCTTGTCTACTGCACCGCTGGTATCTCTGGTGGACACATCAACCCTGCGGTTACTTTTGGACTGTTCTTAGCTCGAAAGGTGTCTCTGATTCGAGCTGTGTTTTACATGGTAGCACAGTGTTTGGGTGCTATTTGCGGTGTTGGGTTGGTGAAGGCTTTCATGAAGCACCCTTACAACTCCCTTGGTGGTGGTGCTAACTCCGTGGCTTCTGGCTACAACAAAGGCACTGCCCTCGGTGCTGAGATTATCGGAACTTTTGTGCTTGTCTACACCGTTTTCTCCGCCACCGACCCCAAGAGAAGCGCCCGTGACTCCCATGTCCCTGTTTTGGCTCCATTGCCCATTGGTTTTGCGGTTTTCATGGTTCATCTTGCTACCATACCCATCACTGGTACTGGGATAAACCCAGCTAGAAGCTTCGGTGCTGCTGTTATCTTCAACAATAGCAAAGTTTGGGATGACCATGTATATATGCAGCCTTTAATTACCTTTAATATATATATATATATATATATATTTTCTTCCTCATGA 792 0.4861 MSKEVSEEGHQTHHGKDYVDPPPAPLIDLAEIKLWSFYRALIAEFIATLLFLYVTVATVIGHKKQTGPCDGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVFYMVAQCLGAICGVGLVKAFMKHPYNSLGGGANSVASGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNNSKVWDDHVYMQPLITFNIYIYIYIFSSS. 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00051 263 FunFam Probable aquaporin PIP1-2 24 260 - -
Seca4g00051 263 ProSitePatterns MIP family signature. 99 107 IPR022357 -
Seca4g00051 263 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 5 252 IPR034294 -
Seca4g00051 263 SUPERFAMILY Aquaporin-like 31 259 IPR023271 -
Seca4g00051 263 PRINTS Major intrinsic protein family signature 118 137 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g00051 263 PRINTS Major intrinsic protein family signature 81 105 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g00051 263 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g00051 263 PRINTS Major intrinsic protein family signature 167 185 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g00051 263 PRINTS Major intrinsic protein family signature 203 225 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g00051 263 CDD MIP 39 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g00051 263 Gene3D Glycerol uptake facilitator protein. 24 261 IPR023271 -
Seca4g00051 263 NCBIfam MIP family channel protein 43 260 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g00051 263 Pfam Major intrinsic protein 32 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00051 Seca-Chr4 819190 821118 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00051 1 242 Major Intrinsic Protein MIP AT4G35100 90.909 2.45e-164 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00051 K09872 - thj:104804325 462.611