Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca4g00048 | ATGGCATATGTTAAGGCTCAGAAATCAAAGGCCTACTTCAAGAGATACCAAGTCAAGTTTAAGAGAAGAAGAGAGGGAAAGACCGATTACCGAGCCAGGATTCGTTTGATTAATCAGGATAAAAACAAGTATAACACCCCGAAATACCGTTTTGTGGTTCGATTTGTATCCTTTTTTTTAGTCTACAGCAAGGATATCACTGCTCAAATAATATCCGCTAGCATTGCCGGTGACATTGTTCTTGCTGCAGCATATGCGCATGAACTGCCCCGCTATGGTCTTGAAGTTGGTCTTACAAATTATGCTGCAGCCTATTGCACTGGACTCCTCTTGGCTCGTAGAGTTCTTAAAATGCTTGAAATGGATGAGGAGTACGAGGGCAATGTAGAGGCCACTGGAGAGGATTTTTCAGTTGAACCTGCTGAGACCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTATTAGGACCACAACTGGCAATCGTGTCTTTGGTGCACTTAAGGGAGCTTTGGATGGGGGTTTGGATATCCCTCACAGTGATAAAAGGTTTGCTGGTTTTGACAAGGAGAAGAAAGAGCTTGATGCTGAGGTTCACCGAAAATATATCTTTGGTGGACATGTTGCTTCCTATATGAAGACGTTGATGGAAGATGAACCGGAGAAGTACCAGTCACACTTCAGTGAATATATCAAGCGTGGGATTGATGCTGATGGAATTGAGGGACTATACAAAAAGGTTCATGCTGCCATTCGTGCAGATCCCACAATAAAGAAGTCTGAGAAGCAGCCACCAAAGGAACACAAGAGATACAACCTCAAGAAGCTCACATATGAGGAGAGGAAAACGAAGTTGATTGCACGCTTGCAAGCTCTTAACTCTGCAGCTGGATGTGCTGATGAAGATGATGAGTGA | 918 | 0.4401 | MAYVKAQKSKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFVSFFLVYSKDITAQIISASIAGDIVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDEEYEGNVEATGEDFSVEPAETRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFDKEKKELDAEVHRKYIFGGHVASYMKTLMEDEPEKYQSHFSEYIKRGIDADGIEGLYKKVHAAIRADPTIKKSEKQPPKEHKRYNLKKLTYEERKTKLIARLQALNSAAGCADEDDE. | 306 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca4g00048 | 305 | CDD | Ribosomal_L18_L5e | 41 | 176 | - | - | |
| Seca4g00048 | 305 | Pfam | Ribosomal large subunit proteins 60S L5, and 50S L18 | 14 | 181 | IPR005485 | GO:0003735|GO:0005840|GO:0006412|GO:0008097 | |
| Seca4g00048 | 305 | FunFam | 60S ribosomal protein L5 | 1 | 297 | - | - | |
| Seca4g00048 | 305 | Hamap | 50S ribosomal protein L18 [rplR]. | 14 | 252 | IPR005485 | GO:0003735|GO:0005840|GO:0006412|GO:0008097 | |
| Seca4g00048 | 305 | PRINTS | Ribosomal protein L5 signature | 150 | 169 | IPR005485 | GO:0003735|GO:0005840|GO:0006412|GO:0008097 | |
| Seca4g00048 | 305 | PRINTS | Ribosomal protein L5 signature | 20 | 39 | IPR005485 | GO:0003735|GO:0005840|GO:0006412|GO:0008097 | |
| Seca4g00048 | 305 | PRINTS | Ribosomal protein L5 signature | 212 | 232 | IPR005485 | GO:0003735|GO:0005840|GO:0006412|GO:0008097 | |
| Seca4g00048 | 305 | PRINTS | Ribosomal protein L5 signature | 43 | 62 | IPR005485 | GO:0003735|GO:0005840|GO:0006412|GO:0008097 | |
| Seca4g00048 | 305 | PRINTS | Ribosomal protein L5 signature | 170 | 189 | IPR005485 | GO:0003735|GO:0005840|GO:0006412|GO:0008097 | |
| Seca4g00048 | 305 | Gene3D | - | 1 | 297 | - | - | |
| Seca4g00048 | 305 | SUPERFAMILY | Translational machinery components | 11 | 258 | - | - | |
| Seca4g00048 | 305 | Pfam | Ribosomal L18 C-terminal region | 241 | 294 | IPR025607 | - | |
| Seca4g00048 | 305 | PANTHER | RIBOSOMAL PROTEIN L5-RELATED | 1 | 296 | IPR005485 | GO:0003735|GO:0005840|GO:0006412|GO:0008097 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca4g00048 | Seca-Chr4 | 791824 | 794299 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca4g00048 | 1 | 298 | Cytoplasmic Ribosomal Protein Gene Family | AT5G39740 | 80.872 | 0.0 | 501 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca4g00048 | K02932 | - | gmx:100805868 | 526.554 |