Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00045 ATGCACAAAACTGACACTGAGTACTCACAATGTGTGTGTGAGCATGAAGCAATGGACATCAGTGAAGGAAAAGAGCCCATGGAGGATGTGTGGTTAGAGTTCCTGGATGAGGCTTTGGAGGATCTGGAAATGCTCTTCCAACAGTGCGACCACATTATGCCTTCCTTTGATGATGCGCTTCTTCCAACAGCTGCAACAAGTGCAATGGAATACAATGGAAGGTGTGATCAATCACAACGAGTAGCCTCGTTAAGTAGGTTTCGGCAAAAGAGGAAAGAGCGATGTTTTCATAGCAAAACTACATCTGGTGATAATGGTGCAATGGAATATCCTGAAAGATATAGTCAAACGGAACGAGCAGCCTCATTAAGTAGGTTCCAGAACAAGAAGAAAGAACGATCCTTTGGTAATAAAGTCAGATATAGTTCACGTCAAGAAGCTGCTCTCAGGTCAGGTCTTATTAGATTACAATCTTGA 477 0.4277 MHKTDTEYSQCVCEHEAMDISEGKEPMEDVWLEFLDEALEDLEMLFQQCDHIMPSFDDALLPTAATSAMEYNGRCDQSQRVASLSRFRQKRKERCFHSKTTSGDNGAMEYPERYSQTERAASLSRFQNKKKERSFGNKVRYSSRQEAALRSGLIRLQS. 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00045 158 ProSiteProfiles CCT domain profile. 119 158 IPR010402 GO:0005515
Seca4g00045 158 MobiDBLite consensus disorder prediction 124 139 - -
Seca4g00045 158 Pfam Jas motif 79 97 IPR018467 -
Seca4g00045 158 MobiDBLite consensus disorder prediction 95 141 - -
Seca4g00045 158 PANTHER GATA TRANSCRIPTION FACTOR 28 105 150 IPR045280 GO:0006355
Seca4g00045 158 Pfam CCT motif 119 148 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00045 Seca-Chr4 709936 713925 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00045 111 150 Tify Gene Family AT1G51600 52.500 1.63e-07 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca4g00045 CCT 1.3e-07 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00045 - - jre:108988673 62.003