Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00040 ATGGTGGTAGGGCAAGCTCTTCCTTCTCCTTCTCCTTCAATTTCGAGCCTCAAACATTCTGGAAAAACGGTGCTGCTCACCCTCGGAGTTAGAGTCACACCCTCTTTCTCTGTTTCCGCCACTGCTTCCACCAATCATGTTCATGAAGACGCCTCCTCAACCAATGACAATGATTCTCCCATCAAACCATCATCAAGTTTTGGAAGACTAAAAGCCCACCAAGTGAAAGCTCTCATTCACAGAACCAAGCAGCAAAAACGCACTCTTGATGATAACCCTGTTCTACAATCTACCAATTCTATTGAAGACTCTGATGACACCGATAGTCGTAAACCCCGTTCTTCAAGTACAAGGCGTTCTCCCCCTCATTTAAGAGGATGGAGTGATAGCATTCCCAAGTCTCAATCACAAAAGGAACACAGAAAATCATCTTTGACGGACACCAACTTTTTCAGTCTCAAGTCCTTTAAAGATATAGGCTGCACTGACAATATCATTCAATCCCTACAAAGCCAGTCCTATAAGCGCCCTTCACATATACAGGCCATGGCATTTGCTCCTGTTGTTGGCAGAAAGACTTGTGTCATAGCTGATCAAAGCGGTTCCGGAAAGACCTTAGCTTATCTTGCACCAATAGTTCAGCGTCTCAGACAAGAAGAACTAGAAGGACATAGTAAATCCTCTTCACAAGCTCCTAGAGTGGTTGTACTGGCACCAACAGCTGAGTTGGCTTCTCAGGTCTTGAATAATTGTCGATCATTGTCAAAATCTGGGGTTCCATTCAAATCTATGGTTGTCACGGGTGGCTTTCGACAAAGAACTCAACTGGAAAATTTACAACAGGGTGTAGATGTCTTAATAGCCACACCTGGCCGTTTCTTGTTCCTGATAAAGGAAGGCTTCTTGCAGTTAACGAATCTTAGATGTGCTGTGTTGGATGAGGTTGATATACTCTTTGGTGATGAGGACTTCGAAGTGGCTCTTCAATGCTTGATTAATTCTTCACCAGTTGACACACAATATTTATTTGTGACTGCAACTTTACCAAAAAATGTTTATAGCAAACTGGTTGAAGTTTTTCCCGATTGTGAAATGATCATGGGACCTGGTATGCACCGAATAAGCTCTCGCCTTGAAGAGATTGTAGTAGATTGCAGTGGAGACGATGGACAAGAAAAAACTCCTGACACAGCATTTTTGAACAAGAAAGCTGCTCTTCTGCAGCTTGTGGAGGGAAGCCCTGTCCCAAGAACTATCGTGTTCTGTAACAAAATTGAAACATGCAGAAAAGTTGAAAATGCATTAAAGCGTTTTGATAGAAAAGGAATGCGAATGCAAGTTCTACCATTCCATGCTGCCATGACACAAGAATCACGGCTTTCAAGTATGGAAGAGTTTAGACGTTCTCCATCAAAAGAAGTATCTCAGTTTATGGTTTGCACTGACAGAGCATCACGGGGAATTGACTTCACAGGAGTGGATCATGTCATACTTTTTGACTTCCCACGCGATCCAAGTGAATATGTACGGCGTGTGGGAAGAACAGCGAGAGGTGCTAAGGGACAGGGCAAGGCATATATCTTTGTGGTTGGCAAGCAAGTATCCCTTGCACGCAAAATAATGGAAAGAAATCAGAAGGGTCACCCATTACACGATGTTCCTTCGGCTTATGAGCTAATGAAGTAG 1686 0.4324 MVVGQALPSPSPSISSLKHSGKTVLLTLGVRVTPSFSVSATASTNHVHEDASSTNDNDSPIKPSSSFGRLKAHQVKALIHRTKQQKRTLDDNPVLQSTNSIEDSDDTDSRKPRSSSTRRSPPHLRGWSDSIPKSQSQKEHRKSSLTDTNFFSLKSFKDIGCTDNIIQSLQSQSYKRPSHIQAMAFAPVVGRKTCVIADQSGSGKTLAYLAPIVQRLRQEELEGHSKSSSQAPRVVVLAPTAELASQVLNNCRSLSKSGVPFKSMVVTGGFRQRTQLENLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILFGDEDFEVALQCLINSSPVDTQYLFVTATLPKNVYSKLVEVFPDCEMIMGPGMHRISSRLEEIVVDCSGDDGQEKTPDTAFLNKKAALLQLVEGSPVPRTIVFCNKIETCRKVENALKRFDRKGMRMQVLPFHAAMTQESRLSSMEEFRRSPSKEVSQFMVCTDRASRGIDFTGVDHVILFDFPRDPSEYVRRVGRTARGAKGQGKAYIFVVGKQVSLARKIMERNQKGHPLHDVPSAYELMK. 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00040 561 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 82 558 - -
Seca4g00040 561 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 154 182 IPR014014 GO:0003724
Seca4g00040 561 MobiDBLite consensus disorder prediction 44 64 - -
Seca4g00040 561 SMART ultradead3 173 381 IPR014001 -
Seca4g00040 561 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 530 IPR027417 -
Seca4g00040 561 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 185 366 IPR014001 -
Seca4g00040 561 Gene3D - 379 552 IPR027417 -
Seca4g00040 561 MobiDBLite consensus disorder prediction 119 133 - -
Seca4g00040 561 Pfam DEAD/DEAH box helicase 179 352 IPR011545 GO:0003676|GO:0005524
Seca4g00040 561 Pfam Helicase conserved C-terminal domain 402 518 IPR001650 -
Seca4g00040 561 CDD SF2_C_DEAD 378 529 - -
Seca4g00040 561 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 405 561 IPR001650 -
Seca4g00040 561 CDD DEADc 165 352 - -
Seca4g00040 561 Gene3D - 123 366 IPR027417 -
Seca4g00040 561 MobiDBLite consensus disorder prediction 44 144 - -
Seca4g00040 561 SMART helicmild6 429 519 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00040 Seca-Chr4 656402 662143 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00040 153 540 Eukaryotic Initiation Factors Gene Family AT3G19760 26.276 1.24e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00040 K13179 - gmx:100784377 747.273