Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00038 ATGTTATTCATGGAGATTGATCTTGAGCTGCCTATATGTGAGCATGAGAAGTTTGATATTGAATCTAATGGAAATGATGTTGCCGATACTGTATGTGATATACATGTTGAGGTGCAAAACAATAATCCTTCTTCAATGACTGAACACTACAAGGAAGTTTTGAGTGAAAATGCTTTCTGTTACCAGGATCAGGTAGATTTGAATTCCAATCAGGTAGATACTATCGATAAAAATGGCTTTAAAGAGCCACAGAATGGCTTGGAGTTTGAATCAAAGGAGGCTGCCTATTCTTTCTACAGAGAATATGCTCGCACAGTGGGATTTGGTATCACAATAAAAGCCAGTCGACGCTCAAAAAAGTCTGGTAAATTCATTGATATTAAAATTGCTTGTTCCAGGTTTGGAAGCAAGCGTGAGTCTGGTACAAAAGTTAATCCACGACCATGTATGAAGACAGACTGCAAGGCTGGCATGCACATGAAGAAGAAGCTAGATGGTAACTGGATCATATACAATTTTGTAAAAGAGCACAATCATGAGATCTGTCCAAATGATTTCTTGAGGGGGCGGAGCAAACAAACAAGTAATGTAGCTTGTCAGAAGAAGGGTATGCAATTGGCTCTAGACAAGGGAGATGTGCAGGTGATGATTGAATACTTTGTATTTATGCAGGGTGAGAATCCTAACTTCTTTTATGCAATAGACCTGGATCCAAATAGTCATTTGAGAAGTGTATTTTGGGTTGACTCAAAGGGCAGGCTTGATTATCAAAACTTCCATGATGTTGTTTTGATTGACACTTTTTACATGAAAAACAAATACAAAATTCCTTTTGTTCCTATTGTGGGAGTCAACCATCACTTCCAGTACATTTTACTTGGATGTGCACTGATTGGTGAGGAGACTGGTTCAGCTTTTATATGGTTAATGCAAACATGGCTCAAAGCAATGAGTAACCTACCCCCGAAGGTGATTATCACAGACCAAGATAAATTCTTGAAAGAAGCTGTTGTAAAAGTGTTTCCAGATACACATCATTTCTTCTGTCTATGGCATATTTTGTGTAAAACCACCAAGAATTTGGGTTATATCATAAGTCAAAATAATAACTTTATGGAAAAATTTACCAAATGCATCCATCATTCCTGTTCAGATGAGCAGTTTGAAAAGAGATGGTGGAAACTGATCAATAGATTTGAACTAAAGAACAATGAATGTGTTCAATCATTGTATGAAGATCGTAAGAAGTGGGTGCCCACATTCATGCAGGATGTTTCTCTGGTGGGATTGTCAACAACTGTAAGGTCTGAAAGTACAACCTCATCCTTTGACAAGTATATTCGTGTTGATTCTACCTTTAAGGAGTTTATTGAACAGTATAAAGTTTTCTCTACTCACAGTTTTGACATGGAAGCCAAAGCTGACTTTGAGACAAGACAAAGGCAACTTGCATTAAGATCTCTATCACCTTTTGAGAAACAGCTATCTACAATTTATACAGATGTCATATTTAGAAAAATTCAGTTGGAGATAGTGGGAGCAGTATCTTGTTGTCTCCGGAAGGAAACAGAAGACAGAACAAATGTAACATTTCTTGTTGATGACTTTGAGGAGAGGAAGAAATTTGTTGTTTCTTGGAACAAGGCAGATTTGGTTGTCTGTTGTTCATGTCATTTATTTCAATACAAAGGCTTTCTATGTAGACATGCAATACTTGTCATTCAGATGTCTGGTATTACCAACATTCCATCCCGTTATATCTTGAAACGATGGACAAAAGATGCAAAGGCCTATCAGTTTGCTGGTGACCTAATTAGCAGGGCTGCTAGTCGAATGCAACGTTTTAATGACCTTTGTAGGCGGGCAATTATATTAAGTGAAATTGGGTCATTTTGTGAAGATTCTCACCGCATTGCGTCTCAGGCACTGGAAGAAGTCTATAAGCATTGTATGAATGCAAACAATTCTACTAGAAGCACTTTAGAGCCCAACAACTTGGCTCTTAATGGTTTTGTTGATGTTGAAGAGAAGAATTATGGCTTCCATAGGACAAAGTCTACAAAGAAAAGGAAGTCATATAATAAAAGGGTTAGTTGA 2097 0.3743 MLFMEIDLELPICEHEKFDIESNGNDVADTVCDIHVEVQNNNPSSMTEHYKEVLSENAFCYQDQVDLNSNQVDTIDKNGFKEPQNGLEFESKEAAYSFYREYARTVGFGITIKASRRSKKSGKFIDIKIACSRFGSKRESGTKVNPRPCMKTDCKAGMHMKKKLDGNWIIYNFVKEHNHEICPNDFLRGRSKQTSNVACQKKGMQLALDKGDVQVMIEYFVFMQGENPNFFYAIDLDPNSHLRSVFWVDSKGRLDYQNFHDVVLIDTFYMKNKYKIPFVPIVGVNHHFQYILLGCALIGEETGSAFIWLMQTWLKAMSNLPPKVIITDQDKFLKEAVVKVFPDTHHFFCLWHILCKTTKNLGYIISQNNNFMEKFTKCIHHSCSDEQFEKRWWKLINRFELKNNECVQSLYEDRKKWVPTFMQDVSLVGLSTTVRSESTTSSFDKYIRVDSTFKEFIEQYKVFSTHSFDMEAKADFETRQRQLALRSLSPFEKQLSTIYTDVIFRKIQLEIVGAVSCCLRKETEDRTNVTFLVDDFEERKKFVVSWNKADLVVCCSCHLFQYKGFLCRHAILVIQMSGITNIPSRYILKRWTKDAKAYQFAGDLISRAASRMQRFNDLCRRAIILSEIGSFCEDSHRIASQALEEVYKHCMNANNSTRSTLEPNNLALNGFVDVEEKNYGFHRTKSTKKRKSYNKRVS. 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00038 698 Pfam MULE transposase domain 262 354 IPR018289 -
Seca4g00038 698 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 68 650 IPR031052 GO:0006355
Seca4g00038 698 Pfam FAR1 DNA-binding domain 97 182 IPR004330 -
Seca4g00038 698 ProSiteProfiles Zinc finger SWIM-type profile. 540 578 IPR007527 GO:0008270
Seca4g00038 698 SMART 26again6 553 580 IPR006564 GO:0008270
Seca4g00038 698 Pfam SWIM zinc finger 554 576 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00038 Seca-Chr4 646890 653252 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g00038 MULE 7.4e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00038 - - gmx:100802811 1157.13