Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00026 ATGGAGGATGCTAGAAGGAATGTTGATGATCCTTACAGCTCAAACTGTCTAAGTAGCTTTGGTCGGCCATCAACTGCAAGTATAATGACTGAAAATACTGCACCTAATATGGTATACAGGAGAAAGAAGCTACGCAAGGGCACGAATGCCCCTCTATTCAAGCTAGGGCCAACTGATGTGCAGACAAGTGTCAATTTCCCTTCAATCATAAGTTCCTCTGCACATTTATCATCAACTGGAGATCAATCAGCTGGTTTTCAAGATAAGCATGAAATTGAAATGGTTAAAAATCATACTGTACCTTCTATGTTATTTGATGGGGTAGCCAAAGATACCACACAGAAAAACTTAGGTATTGACAGTATAAATGATAGTTGGTCTTCTTCAAAGTCAAATATGGAACTTGTTTCAAATTCTATAGAAACTGAAATGGATGATTCTGGTGAATGCTCCTCCTCCAGTGTAATAGTTATGGATGCCACAGAGGAAGGATTAACAGAAAAGGATTTCTGCATTAATATTTTAAGAAGCCATGGACTTCTTAGAGGAGATTCACTTGCCGATAATGTGGCTTCTTTGGAAGATGCTTTTACCACGGGTAATAGCTACTGTTCCAGGTTATGCAAAATATGTGGTAATTTGGATAGTTCATTGAACATGCTTTTATGTGATCATTGTGAAGATTCATATCATCCGTCTTGTTACAATCCACGCTTGAAAAAATTACCAATTGATGAGTGGTTTTGTCATTCATGTCTTAAAAAAAGGCAGAAAATTCTTAAGGAAGCAATTATCAGATCACCAAGTATCCACAGTGAAATGGGCAAATGTAGAACTGCCTCAGTTAAGACTGAATTGAATCCCATAATGTTGATGTTGAAAAACACTGAGCCATATACAACTGGTGTGCGGGTTGGTAAAGGTTTTCAAGCAGAAGTACCTGACTGGTCTGGCCCAAAAAGAAGACAAACTATATACAAAATACTCTGTCTTATGTTTTGGCACCAATCATACATGAAAGAGAGTTGTGATCTGTGTGATAACAATATGCGAGGTTGGCTACATGATCAACTGACACCATTAGGCTCTATCAAGAACCAAGTTTTCAGTTAA 1113 0.3783 MEDARRNVDDPYSSNCLSSFGRPSTASIMTENTAPNMVYRRKKLRKGTNAPLFKLGPTDVQTSVNFPSIISSSAHLSSTGDQSAGFQDKHEIEMVKNHTVPSMLFDGVAKDTTQKNLGIDSINDSWSSSKSNMELVSNSIETEMDDSGECSSSSVIVMDATEEGLTEKDFCINILRSHGLLRGDSLADNVASLEDAFTTGNSYCSRLCKICGNLDSSLNMLLCDHCEDSYHPSCYNPRLKKLPIDEWFCHSCLKKRQKILKEAIIRSPSIHSEMGKCRTASVKTELNPIMLMLKNTEPYTTGVRVGKGFQAEVPDWSGPKRRQTIYKILCLMFWHQSYMKESCDLCDNNMRGWLHDQLTPLGSIKNQVFS. 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00026 370 ProSiteProfiles Zinc finger PHD-type profile. 205 255 IPR019787 -
Seca4g00026 370 SUPERFAMILY FYVE/PHD zinc finger 204 259 IPR011011 -
Seca4g00026 370 PANTHER PHD AND RING FINGER DOMAIN-CONTAINING PROTEIN 1 208 252 IPR047157 -
Seca4g00026 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 278 IPR013083 -
Seca4g00026 370 SMART PHD_3 207 253 IPR001965 -
Seca4g00026 370 ProSitePatterns Zinc finger PHD-type signature. 208 252 IPR019786 -
Seca4g00026 370 FunFam RING/FYVE/PHD zinc finger superfamily protein 195 273 - -
Seca4g00026 370 Pfam PHD-finger 208 254 IPR019787 -
Seca4g00026 370 Pfam ELM2 domain 303 324 IPR000949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00026 Seca-Chr4 516561 523805 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00026 207 264 C2H2 Transcription Factor Family AT3G01460 37.931 5.39e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca4g00026 PHD 1.7e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00026 - - mtr:11430602 477.248